View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_24 (Length: 414)
Name: NF17861_low_24
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 883174 - 882793
Alignment:
| Q |
15 |
taatcaagactaattaattagtaatttttgtactataatttactgaaattatgggatgatcccctaattttaattgtatatgcagggaatgaattggagg |
114 |
Q |
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| T |
883174 |
taatcaagactaattaattagtaatttttgtactataatttactgaaattatgggatgatcccctaattttaatagtatatgcagggaatgaattggagg |
883075 |
T |
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| Q |
115 |
tatttgctagcatcgaagactcctcctagtttctttggtgtaccatgaaactataatagtaataaataacgcactagatgcatttgtgtgtgaccaacta |
214 |
Q |
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| T |
883074 |
tatttgctagcatcgaagactcctcctagttactttggtgtaccatgaaactataatagtaataaataacgcactagatgcatttgtgtgtgaccaacta |
882975 |
T |
|
| Q |
215 |
tcatcatcaacctgacctagtcttgttttccattaccctctaatcagtttgattaatgatactgcttgctactacttgtgatttcttgtcgggtttttgt |
314 |
Q |
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| T |
882974 |
tcatcatcaacctgacctagtcttgttttccattaccctctaatcattttgattaatgatactgcttgctactacttgtgatttcttgtcgggtttttgt |
882875 |
T |
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| Q |
315 |
ttagaagaagggtcgaataatataggcatgtgcaaacagactacttacaacacctttagtttctatgttgcctgcggttacatct |
399 |
Q |
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| T |
882874 |
ttagaagaagggtcg---aatataggcatgtgcaaacagactacttacaacacctttagtttctatgttgcctgcggttacatct |
882793 |
T |
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