View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17861_low_26 (Length: 385)
Name: NF17861_low_26
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 19976221 - 19975858
Alignment:
| Q |
1 |
tgtttttcgtgccaacttatctgagggtggaaacaaatttagaaaatt-attctatttctaagtcaacgagagttggaatccgctgtcaagattccaatt |
99 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19976221 |
tgttttacgtgccaacttatctgacggtggaaacaaatttagaaaaaagattctacttctaagtcaacgagagttggaatccgctgtcaagattc----- |
19976127 |
T |
|
| Q |
100 |
tattctgtacctcatctatttatgtaacaaattcactattctaaaccactttctcagtgctttaggtaacttattttcactcaaacttctgttatataag |
199 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19976126 |
-----tctacctcatatatttatgtaacaaattcactattctaaaccactttctcagcgctttaggtaacttattttcactcaaacttctgttatataag |
19976032 |
T |
|
| Q |
200 |
tctttcctaattccacaatttgtatgtcaaatcaaagatatctgtcttatgtcccactgatacagtttttaaaagcaaagcaattaattaggtagagttc |
299 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19976031 |
tctttcctaattccacaatttgtgtgtcaaatcaaagatctctgtcctatgtcccactaatacagtttttaaaagcaaagcaattaattaggtagagttc |
19975932 |
T |
|
| Q |
300 |
tga--nnnnnnnatacactgttttttgagtatttctttggctaacttgttgctatgattcaacacttttctttt |
371 |
Q |
| |
|
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19975931 |
tgatttttttttatacactgtttgttgagtatttctttagctaacttgttgctatgattcaacacttttctttt |
19975858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University