View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_27 (Length: 382)
Name: NF17861_low_27
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 38356061 - 38356411
Alignment:
| Q |
19 |
tattatacactctcacattccaagaacttgattatcaaccacaaatgctacctat-----actatagttcaaggcctaaataaaggtatttgctaaaaat |
113 |
Q |
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| T |
38356061 |
tattatacactctcacattccaagaactt----atcaaccacaaatgctacctatactatactatagttcaaggcctaaataaaggtatttgctaaaaat |
38356156 |
T |
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| Q |
114 |
tccacatatttggtatgaaacacttggaaaatcaatatcccccatgtaactatacttgaatagcacattctagttttcaagatacttgagtgaaacatga |
213 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356157 |
tccacatatttggtatgagacacatggaaaatcaatatcccctatgtaactatacttgaatagcacattctagttttcaagatacttgagtgaaacatga |
38356256 |
T |
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| Q |
214 |
ggtgaaattaaaaagcattcttaatcttgaagactaataatttaacccacttagtataactgaatgaaggtttatctgaaacaggtatgagctttactaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356257 |
ggtgaaattaaaaagcattcttaatcttgaagactaataatttaacccacttagtataactgaatgaaggtttatctgaaacaggtatgagctttactaa |
38356356 |
T |
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| Q |
314 |
gcaagcaagtggccatgaaacaactgcaattccaatacaaattccccattgctcc |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38356357 |
gcaagcaagtggccatgaaacaactgcaattccaatacaaattccccattgctcc |
38356411 |
T |
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