View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_28 (Length: 376)
Name: NF17861_low_28
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 3958447 - 3958103
Alignment:
| Q |
18 |
ataaaacagattaatttccattcacttgcgatcagttgcatatacagaattacacattgtgagctgagtttcatacatctacttttacaatcctcttatg |
117 |
Q |
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| T |
3958447 |
ataaaacagattaatttccattcatttgcaatcagttgcatatacagaattacgcattgtgagctgagtttcatacatctacttttacaatcctcttatg |
3958348 |
T |
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| Q |
118 |
ttattcttctttaactgacttggatattggaaatgccgcaaccactgcatgaaactgcagaacaaaaaacaaatatatttcaatggatattatttaggtc |
217 |
Q |
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| T |
3958347 |
ttattcttctttaactgacttggatattggagatgctgcaaccactgcatgaaactgcagaacaaaaaacaaatatatttcaatggatattatttaggtc |
3958248 |
T |
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| Q |
218 |
tatgtataataatcgtaattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattct |
317 |
Q |
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| T |
3958247 |
tatgtataataatcgtaattataaaaagtaatttttataactcgaatgttaagcatgtctacttacatcaaactatagacttctgtgtaaatcaaattct |
3958148 |
T |
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| Q |
318 |
tcatcttcagctgcatgatgtaatgttgaataactcgacttctat |
362 |
Q |
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| T |
3958147 |
tcatcttcagttgcatgatgtaatgttgaataactcgactgctat |
3958103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 3998438 - 3998531
Alignment:
| Q |
233 |
taattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttca |
326 |
Q |
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| T |
3998438 |
taatgatagaaagtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttca |
3998531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 3958089 - 3958037
Alignment:
| Q |
276 |
ctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttcagc |
328 |
Q |
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| T |
3958089 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagc |
3958037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 327
Target Start/End: Original strand, 4022623 - 4022678
Alignment:
| Q |
272 |
gtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttcag |
327 |
Q |
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| T |
4022623 |
gtgtctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag |
4022678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 3984475 - 3984560
Alignment:
| Q |
238 |
ataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttca |
326 |
Q |
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|||| ||||||| || |||||||||||||||| |||| ||||||||||| |||| | ||||| |||||||| ||||||||||||| |
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| T |
3984475 |
ataagaagtaatgttgataactcgaatgttaatcgtggttacttacatcagactaca---ttgtgcctaaatcaacttcttcatcttca |
3984560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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