View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_29 (Length: 372)
Name: NF17861_low_29
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 48823001 - 48823354
Alignment:
| Q |
1 |
gttatgaacggtagacaggagtgttggatgcatctttgcaggaaattcttttgctannnnnnnnnnnncaattaaataactgctagatttcaagtgttaa |
100 |
Q |
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| T |
48823001 |
gttatgaacggtagacaggagtgttggatgcatctttgcaggaaattcttttgatatttttcttttttcaattaagtaactgctagatttcaagtgttaa |
48823100 |
T |
|
| Q |
101 |
ttttgtcagtattgttattcaatcagnnnnnnntcatagtgatttgcaagagattaaattacaaacaagtatgcatatattttccataaacagtaaaaag |
200 |
Q |
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| T |
48823101 |
ttttgtcagtattgttattcaatcagaaaaaaatcatagtgatctgcaagagattaaattacaaacccgtatgcatatattttccataaacagtaaaaag |
48823200 |
T |
|
| Q |
201 |
ttaatttcatcttctccactaaaagggcttgcagcaactctcgtcgctgatgctgctgaatattccaaaaaggagcccaatgacaacagaatggatgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823201 |
ttaatttcatcttctccactaaaagggcttgcagcaactctcgtcgctgatgctgctgaatattccaaaaaggagcccaatgacaacagaatggatgatt |
48823300 |
T |
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| Q |
301 |
ttggggctccttcaacaaaaaccactttgctgactttaatggtcatgtgtcttg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48823301 |
ttggggctccttcaacaaaaaccactttgctgactttaatggtcatgtgtcttg |
48823354 |
T |
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