View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_3 (Length: 664)
Name: NF17861_low_3
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 337 - 646
Target Start/End: Complemental strand, 3228967 - 3228659
Alignment:
| Q |
337 |
agcaggtttgggtttgttattgttggtgtttggtttgaattgatagaagattgtgaacaagtgttcttcatcgttgagagagctagaattaccaatgcta |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3228967 |
agcaggtttgggtttgttattgttggtgtttggtttgaattgatagaagattgtgaacaagtgttcttcatcgttgagagagctagaattaccaatgcta |
3228868 |
T |
|
| Q |
437 |
aacgccggtggaactatatcaaacctttgtttcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtatactgtgtgatta |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3228867 |
aacgccggtggaactatatcaaacctttgtttcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtatactgtgtgatta |
3228768 |
T |
|
| Q |
537 |
ttttctatgaatgannnnnnnnnncttcttttatatacaacacccacactcctcaactcaatgannnnnnnnacaaaggacaaaatcataagggcttaca |
636 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3228767 |
ttttctatgaatga-ttttttcttcttcttttatatacaacacccacactcctcaactcaatgatgtcttttacaaaggacaaaatcataagggcttaca |
3228669 |
T |
|
| Q |
637 |
cccaaaatgg |
646 |
Q |
| |
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|||||||||| |
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| T |
3228668 |
cccaaaatgg |
3228659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 3237648 - 3237335
Alignment:
| Q |
12 |
ataattctatacacataatgtgcattctaaatgtccaatctgacaaaccaatggaggggataaagtgctataaatagtaactcattacttttgaccaact |
111 |
Q |
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||||||||||||||| |||||||||||||||| | ||||||||| |||||| |||| | ||||||||||||||| || |||| ||| | |||| ||||| |
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| T |
3237648 |
ataattctatacacacaatgtgcattctaaattttcaatctgactaaccaaaagaggagctaaagtgctataaattgtgactcgttattcttgagcaact |
3237549 |
T |
|
| Q |
112 |
actgtttgatagtaaaagaactcattcaacattcaagcctagcataacttctgtgagatgaattttcaaggtgcaaagcaaatgtaaagaaatttaaagt |
211 |
Q |
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| T |
3237548 |
actatttgacagtaaaagaactcattcaacattcaagcctagcataacttctgtgagatgaattttcaaggtgcaaagcaaatgtacagaaatttaaagt |
3237449 |
T |
|
| Q |
212 |
atctatggaagcagttaaaaatcttggattggatatgataacaaagtattccatcatggtattctaaacttgtccaaactccacagtaaagagaagcatc |
311 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| |
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| T |
3237448 |
atctatgtaagcagttaaaaatcttggattggatatgataacaaagtattccatcattccattctaaacttgtacaaactccacagtaaaaagaactatc |
3237349 |
T |
|
| Q |
312 |
acagtgtgtattca |
325 |
Q |
| |
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| |||||||||||| |
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| T |
3237348 |
aaagtgtgtattca |
3237335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 546
Target Start/End: Complemental strand, 3234001 - 3233949
Alignment:
| Q |
494 |
gatttatttgaatttccgttaattcttgtatactgtgtgattattttctatga |
546 |
Q |
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| T |
3234001 |
gatttatttgaatttctgttaattcttgtatgttgtgtgattattttctatga |
3233949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 524
Target Start/End: Original strand, 3866173 - 3866229
Alignment:
| Q |
468 |
tcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtat |
524 |
Q |
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| T |
3866173 |
tcattgaaagtaagttcctcttcgacgatttatttgaattttcgttaattcttgtat |
3866229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 22028896 - 22028979
Alignment:
| Q |
462 |
tttgtttcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtatactgtgtgattattttctatg |
545 |
Q |
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| T |
22028896 |
tttgtgtcattgaaagtaagttcctctttgtcgatttatttgaatttctgtttattcttccatgttgtgtgactattttctatg |
22028979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 472 - 537
Target Start/End: Complemental strand, 16839161 - 16839096
Alignment:
| Q |
472 |
tgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtatactgtgtgattat |
537 |
Q |
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| T |
16839161 |
tgaaagtaagttcctcttccacgatttatttgaatttccgttaattcttgtatgttgtttgattat |
16839096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 546
Target Start/End: Original strand, 22011131 - 22011213
Alignment:
| Q |
462 |
tttgtttcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtatactgtgtgattattttctatga |
546 |
Q |
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||||| |||||||||||| |||||||||| | |||||||| |||||| |||||||||||||| | ||| |||||||||||||| |
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| T |
22011131 |
tttgtgtcattgaaagtaagttcctctttaa--atttattttaatttctgttaattcttgtatgttatgttattattttctatga |
22011213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 16846254 - 16846192
Alignment:
| Q |
462 |
tttgtttcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtat |
524 |
Q |
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|||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
16846254 |
tttgtttcattgaaagtaagttcctcttcattgatttctttgaattgccgttaattcttgtat |
16846192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 546
Target Start/End: Original strand, 18322655 - 18322739
Alignment:
| Q |
462 |
tttgtttcattgaaagtatgttcctctttgacgatttatttgaatttccgttaattcttgtatactgtgtgattattttctatga |
546 |
Q |
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||||| |||||||||||| ||||||||| || ||| || ||||||||| |||||||||| ||| ||| ||||||| || ||||| |
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| T |
18322655 |
tttgtgtcattgaaagtaagttcctcttcgatgatatacttgaatttctgttaattcttatatgttgtttgattatgttatatga |
18322739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 39930980 - 39931067
Alignment:
| Q |
126 |
aaagaactcattcaacattcaa-gcctagcataacttctgtgagatgaa-ttttcaaggtgcaaagcaaatgtaaagaaatttaaagtat |
213 |
Q |
| |
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||||||||| |||| | ||||| |||||||||||||| || ||||||| ||||| ||||| ||||||||||||||| |||||||||||| |
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| T |
39930980 |
aaagaactcgttcatctttcaaagcctagcataactt--gttagatgaaattttccaggtggaaagcaaatgtaaaggaatttaaagtat |
39931067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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