View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_32 (Length: 354)
Name: NF17861_low_32
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_32 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 2162421 - 2162128
Alignment:
| Q |
19 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaacca |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2162421 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagcgattacgaaatgcagcgccttctctttgaggtttcagttcagcttcttcaacca |
2162322 |
T |
|
| Q |
119 |
tcttttcccaataaattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaag |
218 |
Q |
| |
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|||||||||||||| ||||||| |||||||||| |||||||||| |||| | |||| |||||||| ||||||||||||||||||||||||| |
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| T |
2162321 |
tcttttcccaataatttgtgagtattttatgaaatacaacaacatcatgatcaaactgtgcgttcttgtttttgtagctgtcatagtaccctatgtcaag |
2162222 |
T |
|
| Q |
219 |
attttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
2162221 |
attttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcaatttcttggatggatcaaatgatgtcttcttttga |
2162128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 2168584 - 2168291
Alignment:
| Q |
19 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaacca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2168584 |
agtggttcaaccattcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttcaacca |
2168485 |
T |
|
| Q |
119 |
tcttttcccaataaattgtga-gctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaa |
217 |
Q |
| |
|
||||||||||| ||| | ||| |||||||| | | | |||| ||| ||||| ||| |||| |||||||| |||||||||||||||||||||||| |
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| T |
2168484 |
tcttttcccaaaaaaatatgatgctttttaa-ataccaatcaacttcataatcagctgatacgttcttgtttttgtagctgtcatagtaccctatgtcaa |
2168386 |
T |
|
| Q |
218 |
gattttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga |
312 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2168385 |
gattttttgttttctttctgtaccattcaagttgcgccatatgtcgcctcatttcattcagtttcttggatggatcaaatgatgtcttcttttga |
2168291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 2180217 - 2179924
Alignment:
| Q |
19 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaacca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2180217 |
agtggttcaaccattcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttcaacca |
2180118 |
T |
|
| Q |
119 |
tcttttcccaataaattgtga-gctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaa |
217 |
Q |
| |
|
||||||||||| ||| | ||| |||||||| | | | |||| ||| ||||| ||| |||| |||||||| |||||||||||||||||||||||| |
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| T |
2180117 |
tcttttcccaaaaaaatatgatgctttttaa-ataccaatcaacttcataatcagctgatacgttcttgtttttgtagctgtcatagtaccctatgtcaa |
2180019 |
T |
|
| Q |
218 |
gattttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga |
312 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2180018 |
gattttttgttttctttctgtaccattcaagttgcgccatatgtcgcctcatttcattcagtttcttggatggatcaaatgatgtcttcttttga |
2179924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 312
Target Start/End: Complemental strand, 2207390 - 2207160
Alignment:
| Q |
82 |
ccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaataaattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgt |
181 |
Q |
| |
|
|||||| ||| |||||||| |||| | |||||||||||||| ||||||||| ||||||||||||||||||| | |||||||||| ||||||| | || |
|
|
| T |
2207390 |
ccttcttttttaggcttcatttcaacgtcttcaaccatcttctcccaataacttgtgagctttttatgaaactcaacaacatcataatcagatatttcgt |
2207291 |
T |
|
| Q |
182 |
tcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagttt |
281 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| || ||| || ||||||||||||| |||| |
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| T |
2207290 |
acatgtttttgtaactgtcatagtaccctatgtcaagatttgttgttttctttttgtaccattcaacttgtgctatacatcccttcatttcattctgttt |
2207191 |
T |
|
| Q |
282 |
cttggatggatcaaataatgtcttcttttga |
312 |
Q |
| |
|
|| ||||||| |||| || ||||||||||| |
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| T |
2207190 |
atttgatggattaaatgatatcttcttttga |
2207160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 14684 - 14978
Alignment:
| Q |
19 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaacca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14684 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagcgattacgaaatgcagcgccttctctttgaggtttcagttcagcttcttcaacca |
14783 |
T |
|
| Q |
119 |
tcttttcccaataaattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaag |
218 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||||||||| |||| | |||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
14784 |
tcttt-cccaataatttgtgagtattttatgaaatacaacaacatcatgatcaaactgtgcgttcttgtttttgtagctgtcatagtaccctatgtcaag |
14882 |
T |
|
| Q |
219 |
-attttttgttttc-attttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga |
312 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
14883 |
tattttttgttttctattttgtaccattcaagttgcgccatatgtcgcttcatttcattcaatttcttggatggatcaaatgatgtcttcttttga |
14978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 2113 - 2408
Alignment:
| Q |
19 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaacca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
2113 |
agtggttcaaccattcttctatatgtagttccaccgaagagccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttcaacca |
2212 |
T |
|
| Q |
119 |
tcttttcccaataaattg-tga-gctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtca |
216 |
Q |
| |
|
||||||||||| ||| | ||| |||||||| | | |||| ||| ||||| ||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2213 |
tcttttcccaaaaaaataatgatgctttttaaattaccaatcaacttcataatcagctgatacgttcttgtttttgtagctgtcatagtaccctatgtca |
2312 |
T |
|
| Q |
217 |
agattttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga |
312 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2313 |
agattttttgttttctttctgtaccattcaagttgcgccatatgtcgcctcatttcattcagtttcttggatggatcaaatgatgtcttcttttga |
2408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 339
Target Start/End: Original strand, 27781362 - 27781522
Alignment:
| Q |
179 |
tgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttttcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcag |
278 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| | |||| || ||| ||||||| ||||||||||||| ||||||||| ||||| ||||||| |
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|
| T |
27781362 |
tgttcatatttttgtagctgtcatagtaccctatttgttgattcttagttgccattttgaaccattcaagttgggccatatgtaccttcacgtcattcaa |
27781461 |
T |
|
| Q |
279 |
tttcttggatggatcaaataatgtcttcttttgatggatggatagttcttctagtcttttt |
339 |
Q |
| |
|
|||||||||||||| ||| || ||||||| || |||||| ||| |||||| ||| ||||| |
|
|
| T |
27781462 |
tttcttggatggataaaacgatatcttcttctggtggatgaatatttcttcgagttttttt |
27781522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 296
Target Start/End: Original strand, 27785152 - 27785379
Alignment:
| Q |
69 |
acgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaataaattgtgagctttttatgaaagttaacaacatcaata |
168 |
Q |
| |
|
|||||| || || |||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||| || | | ||||||| |
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|
| T |
27785152 |
acgaaaagctgcaccttctttttgaggcttcatctcagcttcttcaaccatcttctcccaataaaaggtgagccttttatggaattgattaacatcatag |
27785251 |
T |
|
| Q |
169 |
tcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttttcattttgtaccattcaagttgcgccatatgtcgcttca |
268 |
Q |
| |
|
||| | |||||||||||||||||||||||| |||||||| | ||| || | |||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
27785252 |
tcatcgggaaagttcatgtttttgaagctgtcataataccctatttgttcattcttagatttctttttgtaccattcaagttgggccatatccaccttcc |
27785351 |
T |
|
| Q |
269 |
tttcattcagtttcttggatggatcaaa |
296 |
Q |
| |
|
| ||||||| ||||| ||||||||||| |
|
|
| T |
27785352 |
tgtcattcaacttctttgatggatcaaa |
27785379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 19488151 - 19488225
Alignment:
| Q |
90 |
ttgaggcttcagttcagcttcttcaaccatcttttcccaataaattgtgagctttttatgaaagttaacaacatca |
165 |
Q |
| |
|
||||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
19488151 |
ttgaggcttcatttcaacttcttcaactat-ttttcccaataaattgtgagctttttatgaaactcaacaacatca |
19488225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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