View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17861_low_35 (Length: 345)
Name: NF17861_low_35
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 388412 - 388718
Alignment:
| Q |
20 |
acaagaacatgtccaagttggctcaagcagaggctgcagcagctggaaaagcagctgcaaagactgtgaggtttgagaatattagtgatggaagtgaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
388412 |
acaagaacatgtccaagttggctcaagcagaggctgcagcagctggaaaagcagctgcaaagactgtgaggtttgagaatattagtgatggaagtgaaaa |
388511 |
T |
|
| Q |
120 |
aatgatgagaaattcacaaacactagctcatataattagtcttggagaaaacgatcatatttttgttggaggagggaaaaagagacataataataagatc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
388512 |
aatgatgagaaattcacaaacactagctcatataattagtcttggagaaaacgatcatattt---ttggaggagggaaaaagagacataataataagagc |
388608 |
T |
|
| Q |
220 |
acaaagcagaagccaatcatccctcttttgagtgatttctttttcaagagaaagaattctactaatcatcataataatcctctttatgcttctccttttt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
388609 |
acaaagcagaagccaatcatccctcttttgagtgatttctttttcaagagaaagaattctactaatcatcataataatcctctttatgcttctccttttt |
388708 |
T |
|
| Q |
320 |
aattaatgta |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
388709 |
aattaatgta |
388718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University