View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17861_low_39 (Length: 328)
Name: NF17861_low_39
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 178 - 289
Target Start/End: Original strand, 7431711 - 7431822
Alignment:
| Q |
178 |
accactacttctatgttagccaaacacaaaggtaacaggagtcaagaaatgctgcagccatcactatatgatgtaagctcttcaaagttagttttatcat |
277 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7431711 |
accactacttctatgttagccaaacaccaaggtaacaggagtcaagaaatgctgcagccatcactatatgatgtaacctcttcaaagttagttttatcat |
7431810 |
T |
|
| Q |
278 |
atttgaatcatt |
289 |
Q |
| |
|
||||| |||||| |
|
|
| T |
7431811 |
atttgcatcatt |
7431822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 7431516 - 7431570
Alignment:
| Q |
10 |
agaagcatagggcaccacaaacaatatcaccaagcttcacattagaatgaaattt |
64 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7431516 |
agaagtatagagcaccacaaacaatatcaccaagcttcacattagaatgaaattt |
7431570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 7431597 - 7431639
Alignment:
| Q |
61 |
atttactactgcatagcagatatattagttatttctatccaac |
103 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7431597 |
atttactactgcatagaagatatattagttatttctatccaac |
7431639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 15837439 - 15837395
Alignment:
| Q |
178 |
accactacttctatgttagccaaacacaaaggtaacaggagtcaa |
222 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
15837439 |
accaatacttctaagttagccaaacaccaaggtaacagcagtcaa |
15837395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University