View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_low_43 (Length: 300)

Name: NF17861_low_43
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_low_43
NF17861_low_43
[»] chr8 (1 HSPs)
chr8 (14-300)||(38558975-38559261)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 38559261 - 38558975
Alignment:
Q  14 tactgctatatataggtgaggtaaaatagatatagataacgtgaaaaggaagctgcatggaaacttccttcctctttgatatatagatagccggcgtgat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38559261 tactgctatatataggtgaggtaaaatagatatagataacgtgaaaaggaagctgcatggaaacttccttcctcattgatatatagatagccggcgtgat 38559162  T
Q  114 taaggatagagatgttttggaattatttcaatatcatcactataacttaggtttcctcgtaaatgcttggattattaggtatagacattcatacaactat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38559161 taaggatagagatgttttggaattatttcaatatcatcactataacttaggtttcctcgttaatgcttggattattaggtatagacattcatacaactat 38559062  T
Q  214 gttcttaacgaaccgcctcatatactgtcacagctcacattgctgccataatcatacaccacacagcacagataaataaataaattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38559061 gttcttaacgaaccgcctcatatactgtcacagctcacattgctgccataatcatataccacacagcacagataaataaataaattc 38558975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University