View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_low_47 (Length: 268)

Name: NF17861_low_47
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_low_47
NF17861_low_47
[»] chr2 (20 HSPs)
chr2 (18-268)||(10348019-10348269)
chr2 (138-253)||(10353469-10353584)
chr2 (18-245)||(9060810-9061037)
chr2 (118-253)||(10372198-10372333)
chr2 (18-268)||(8573151-8573401)
chr2 (28-268)||(9321214-9321454)
chr2 (18-102)||(9328824-9328908)
chr2 (28-103)||(9065409-9065484)
chr2 (18-187)||(9274743-9274912)
chr2 (18-103)||(16269314-16269399)
chr2 (72-192)||(9292213-9292333)
chr2 (29-103)||(10336080-10336154)
chr2 (72-199)||(9316310-9316437)
chr2 (18-103)||(9284007-9284092)
chr2 (127-246)||(7115313-7115432)
chr2 (41-103)||(12005935-12005997)
chr2 (120-189)||(9328926-9328995)
chr2 (138-210)||(9283900-9283972)
chr2 (127-268)||(10336178-10336322)
chr2 (139-187)||(17565808-17565856)
[»] chr4 (1 HSPs)
chr4 (138-253)||(26575221-26575336)
[»] scaffold0667 (1 HSPs)
scaffold0667 (18-268)||(4711-4961)
[»] chr3 (1 HSPs)
chr3 (138-250)||(37462846-37462958)
[»] chr8 (1 HSPs)
chr8 (18-103)||(41966540-41966625)
[»] chr1 (3 HSPs)
chr1 (18-99)||(29467610-29467691)
chr1 (51-103)||(29423529-29423581)
chr1 (53-102)||(29453131-29453180)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 10348019 - 10348269
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348019 gttaaacgcgacaattaaagaaggatgtaacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 10348118  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10348119 tgaagatcgtacggcatagcaggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagta 10348218  T
Q  218 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348219 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 10348269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 10353469 - 10353584
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaattctgaggagt 237  Q
    ||||||||  ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  10353469 aggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagt 10353568  T
Q  238 ttgtaatcaccggata 253  Q
    |||||||| |||||||    
T  10353569 ttgtaatcgccggata 10353584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 9061037 - 9060810
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||||  |||||| | |||||||||||||||| |  |||| |||||||| |||||||| ||||||||||||||   | |  | || |    
T  9061037 gttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatat 9060938  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    |||||| |||||||||||   |||||| | ||||| ||||||||||||||||| ||||| || || |||| ||||||||||  ||||||| || | | ||    
T  9060937 tgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaata 9060838  T
Q  218 agtgagaaattctgaggagtttgtaatc 245  Q
    |   ||  ||||||||||||||||||||    
T  9060837 accaagtgattctgaggagtttgtaatc 9060810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 10372198 - 10372333
Alignment:
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    |||||| |||||||||||| ||||||||||||||| ||||| | |||  ||||||||||||  || |||||||||||||||| | ||||  | |||| ||    
T  10372198 tgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgatta 10372297  T
Q  218 agtgagaaattctgaggagtttgtaatcaccggata 253  Q
    ||| ||| |||||||||||||||| ||| |||||||    
T  10372298 agtaagagattctgaggagtttgtgatcgccggata 10372333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 8573401 - 8573151
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||||  |||||| | |||||||||||||||| |  |||| |||||||| |||||||| ||||||||||||||   | |  | || |    
T  8573401 gttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatat 8573302  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    |||||| |||| ||| ||   |||||| | ||||| ||||||||||||||||| |||||| | || |||| ||||||||||||||| ||| ||  || ||    
T  8573301 tgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgacta 8573202  T
Q  218 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    |   ||| |||| |||||||||||||||  ||| || | ||||||||||||    
T  8573201 accaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccga 8573151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 9321214 - 9321454
Alignment:
Q  28 acaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca--aat--cgtataaatgttgaaga 123  Q
    |||||||||||||||||||| ||| |||||||||| || || |||||||||| |||||||||||||||||||||||  |||   | ||| ||    ||||    
T  9321214 acaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagat----aaga 9321309  T
Q  124 tcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgag 223  Q
      ||||||||||   |||||||| ||||| ||||||||| |  ||||||||||||| || |||| ||||||||||| ||| ||| ||  |  |||   ||    
T  9321310 gagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaag 9321409  T
Q  224 aaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    | |||||||||||||||||||| |||| ||   ||||||||||||    
T  9321410 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccga 9321454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 9328824 - 9328908
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccc 102  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||||| || |||||||||| |||||||||||| |||||||||    
T  9328824 gttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaagagaattctcaaccaaaaccccc 9328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 9065484 - 9065409
Alignment:
Q  28 acaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||||||||||||| ||| |||||||| || || ||| ||||||||||||||||||||||||||||||    
T  9065484 acaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaaccccca 9065409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 9274743 - 9274912
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    ||||||||  ||||||||| |||| ||| || |||||| || | |||| || | |||||||| ||||||||||||||||| |||||   | |  | || |    
T  9274743 gttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaagagaattctcaacaaaaatccccatggcttgaacatat 9274842  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtg 187  Q
    | |||| |||||||||||   |||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  9274843 ttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtg 9274912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 16269314 - 16269399
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||| |  || || ||| |||||||||||||||||||||||||||    
T  16269314 gttaaacgcgacgattaaagaaggatgtaacccgtcaagtttcttcgccattatacagcgaatagaattctcaacaaaaaccccca 16269399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 9292213 - 9292333
Alignment:
Q  72 ccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctg 171  Q
    |||||| |||||||||| |||||||||||||| | | |  | || ||||||| |||||||||||  |||||| || ||||| ||||| |||||  |||||    
T  9292213 ccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttttggagctg 9292312  T
Q  172 aagagtctcacttgtggatca 192  Q
    ||||||||||| |||||||||    
T  9292313 aagagtctcacctgtggatca 9292333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 10336080 - 10336154
Alignment:
Q  29 caattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||| ||||||||||||||||||  ||| || |||||||||| |||||||||||||||||| ||||    
T  10336080 caattaaacaaggttgtaacccatcaagtttcggagtcattatccagtgaagagaattctcaacaaaaacaccca 10336154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 9316310 - 9316437
Alignment:
Q  72 ccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctg 171  Q
    |||||||| |||||||| ||||||||||||||   | |  | || ||||||| |||||||||||   |||||| | ||||| |||||||||||||||||     
T  9316310 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagcta 9316409  T
Q  172 aagagtctcacttgtggatcataaaaag 199  Q
    ||||| || || |||| |||||||||||    
T  9316410 aagagactgacatgtgaatcataaaaag 9316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 9284092 - 9284007
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||||||||| || | | | |||||||||| |||||    || ||||||||||||||||||||||||||||||||||    
T  9284092 gttaaacgcgacaattaaacaaaggtctgacccatcaagattcttttccattatccagtgaatagaattctcaacaaaaaccccca 9284007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 7115432 - 7115313
Alignment:
Q  127 tacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaa 226  Q
    ||||||||  ||||||| || ||||| |||||||||||||| ||||||||||| |  |||| ||||||||||| |||| || ||| |  |||   ||| |    
T  7115432 tacggcattacaggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagaga 7115333  T
Q  227 ttctgaggagtttgtaatca 246  Q
    ||||||| ||||||||||||    
T  7115332 ttctgagaagtttgtaatca 7115313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 12005997 - 12005935
Alignment:
Q  41 gatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||||| |||||||    || |||||||||| |||||||||||||||||||||||    
T  12005997 gatgtaacccatcaggtttcttgaccatcatccagtgaagagaattctcaacaaaaaccccca 12005935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 9328926 - 9328995
Alignment:
Q  120 aagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtgga 189  Q
    |||| |||| ||||||||||||||||| ||||| |||||||||||  || |||||||||| || ||||||    
T  9328926 aagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctgacatgtgga 9328995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 9283972 - 9283900
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtaga 210  Q
    ||||||||| ||||| |||||||||||  |||||||||||||  | |||| || |||||||| ||||||||||    
T  9283972 aggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtaga 9283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 10336178 - 10336322
Alignment:
Q  127 tacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaag---ggttttgtagatcgagtaagtgag 223  Q
    ||||||||| | |||| | | ||||| |||||||||||| ||||||||||| |||  |||| || || |||||   ||| |||||||||||  ||   ||    
T  10336178 tacggcatatccggaagtgttttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaag 10336277  T
Q  224 aaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    | ||||||||||||||||||||  |||||| |  |||||||||||    
T  10336278 agattctgaggagtttgtaatcggcggataatgaatcaaaaccga 10336322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 17565856 - 17565808
Alignment:
Q  139 ggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtg 187  Q
    |||| ||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  17565856 ggaagtattttccacgagttcgttttcaagttgaagagtctcacttgtg 17565808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 26575221 - 26575336
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaattctgaggagt 237  Q
    ||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  26575221 aggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagt 26575320  T
Q  238 ttgtaatcaccggata 253  Q
    |||||||| |||||||    
T  26575321 ttgtaatcgccggata 26575336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 4711 - 4961
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||| ||||||||||||||||||||||||||| |  || |||||||||||||||| |||||| ||||||||||  | || | |        
T  4711 gttaaaagcgacaattagagaaggatgtaacccatcaagtttctttgccattatccagtgaatagaatcctcaaccaaaaccccca--tggtttgagcaa 4808  T
Q  118 tga--agatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgag 215  Q
     ||  ||  |||||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||  ||     
T  4809 agacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagac 4908  T
Q  216 taagtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    |||   ||| | |||||||| ||||||||| |||| ||   ||||||||||||    
T  4909 taaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccga 4961  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 37462846 - 37462958
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaattctgaggagt 237  Q
    ||||| ||| ||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| |    ||| ||||||||||||    
T  37462846 aggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgaggagt 37462945  T
Q  238 ttgtaatcaccgg 250  Q
    |||||||| ||||    
T  37462946 ttgtaatcgccgg 37462958  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 41966625 - 41966540
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||||||||| |||| ||||| |||||||||| ||| || || |||||||||| |||||| | ||||||||||||||    
T  41966625 gttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcattatccagtgaagagaattgtgaacaaaaaccccca 41966540  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 29467691 - 29467610
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacc 99  Q
    |||||||| || ||||||| |||  ||||||||||||||||||||  | || ||||| |||| |||||||||||||||||||    
T  29467691 gttaaacgcgataattaaacaagattgtaacccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaaacc 29467610  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 29423529 - 29423581
Alignment:
Q  51 atcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||  || || |||||||||| |||||||||||||||||||||||    
T  29423529 atcaagtttctccgtcattatccagtgaagagaattctcaacaaaaaccccca 29423581  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29453180 - 29453131
Alignment:
Q  53 caagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccc 102  Q
    ||||||||  ||| || |||||||||| ||||||||||||||||||||||    
T  29453180 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccc 29453131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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