View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_53 (Length: 250)
Name: NF17861_low_53
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_53 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 49425870 - 49426108
Alignment:
| Q |
12 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
111 |
Q |
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| T |
49425870 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
49425969 |
T |
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| Q |
112 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
211 |
Q |
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| T |
49425970 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
49426069 |
T |
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| Q |
212 |
ttctcatatcagtatttttaaaaacttatcagacatttt |
250 |
Q |
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| T |
49426070 |
ttctcatagcagtatttttcaaaacttatcagacatttt |
49426108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 43363344 - 43363144
Alignment:
| Q |
12 |
atgaagttgtaacatgacattgccaatatgaattggcgaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccatc |
111 |
Q |
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| T |
43363344 |
atgaagttgtaacatga--ttgcaaatgtgcaatggtgaaagcttaagagcataa-aaatgttatcccttatgtcttgaaagttgaatctattaatcatc |
43363248 |
T |
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| Q |
112 |
tcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagctcccttctca |
211 |
Q |
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| T |
43363247 |
tcctacat--agtttaaactggttgttgaacaattgaagtgaaacactaaacaagcttccccaaatgactcattaagacaattcaaaaacttccttctca |
43363150 |
T |
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| Q |
212 |
ttctca |
217 |
Q |
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| T |
43363149 |
ttctca |
43363144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 49423713 - 49423904
Alignment:
| Q |
12 |
atgaagttgtaacatgacattgccaatatgaattggc-gaaatcttaagagcgtaagaaatgctatccctaatgtcttgaaagttgaaactatgaaccat |
110 |
Q |
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| T |
49423713 |
atgaagttgtaacgtgatattgcaaatctgtaatggccgaaattgtacgagcataaaaaatgttatccctaatgtcttgaaagttgaatctatcaaccat |
49423812 |
T |
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| Q |
111 |
ctcatacatttagtttaaactagaggttgaactattgaattgaaaagctgaacaagtttccccaaatgattcattaagacagttcaaaagct |
202 |
Q |
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| T |
49423813 |
ctccaactttaagtttaaaatgaaggttgaacaattgaattaaaacactgaacaagcttccccaaatggcttgttaagacagttcaaaagct |
49423904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 17640994 - 17641049
Alignment:
| Q |
74 |
tatccctaatgtcttgaaagttgaaactatgaaccatctcatacatttagtttaaa |
129 |
Q |
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| T |
17640994 |
tatccctaaattcttgaaagttgaatctatcaaccatgtcctacatttagtttaaa |
17641049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 49416802 - 49416757
Alignment:
| Q |
193 |
ttcaaaagctcccttctcattctcatatcagtatttttaaaaactt |
238 |
Q |
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| T |
49416802 |
ttcaaaagctcccttgtcattctcattgcagtattttttaaaactt |
49416757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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