View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_58 (Length: 237)
Name: NF17861_low_58
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7017472 - 7017692
Alignment:
| Q |
1 |
tattttataaaataagacatgggattttaaaagaaatcatatgattatgaatgggaaaaaatggtgcgaatattaccaattatgtcaattgatgttaatc |
100 |
Q |
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| T |
7017472 |
tattttataaaataagacatgggattttaaaagaaatcatatgattatgaatgggaaaaaatggtgcgaatattaccaattatgtcaattgatgttaatc |
7017571 |
T |
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| Q |
101 |
cattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgtc |
200 |
Q |
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| T |
7017572 |
cattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgtc |
7017671 |
T |
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| Q |
201 |
agataaagagtcaccaaaaac |
221 |
Q |
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| T |
7017672 |
agataaagagtcaccaaaaac |
7017692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 5586965 - 5587104
Alignment:
| Q |
79 |
attatgtcaattgatgttaatccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaa |
178 |
Q |
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| T |
5586965 |
attatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccatagggattgtaattagattttgcagaggtaggaa |
5587064 |
T |
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| Q |
179 |
gatcattgttgtttccactgtcagataaagagtcaccaaa |
218 |
Q |
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| T |
5587065 |
ggttattgttgtttccactatcagataaagagtctccaaa |
5587104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 5573461 - 5573573
Alignment:
| Q |
106 |
gtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgtcagata |
205 |
Q |
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| T |
5573461 |
gtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagaggtaggaaggttattgttgtttccactatcagata |
5573560 |
T |
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| Q |
206 |
aagagtcaccaaa |
218 |
Q |
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| T |
5573561 |
aagaatctccaaa |
5573573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 5615901 - 5616050
Alignment:
| Q |
69 |
aatattaccaattatgtcaattgatgttaatccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgca |
168 |
Q |
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| T |
5615901 |
aatattaccaatcatgtcaattgatgtttttccattggtaaatcttcccgtcggaccttcttgaaagtcgacgccgtacggattgtaattagattttgca |
5616000 |
T |
|
| Q |
169 |
gttgtaacaagatcattgttgtttccactgtcagataaagagtcaccaaa |
218 |
Q |
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| T |
5616001 |
ttggttcgaagattgttgttgtttccattgtcagacaaggagtctccaaa |
5616050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 2629926 - 2629843
Alignment:
| Q |
81 |
tatgtcaattgatgttaatccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttt |
164 |
Q |
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| T |
2629926 |
tatgtcaattgatgttagtctattagtaaaccttccggttgggcctgttgaaaagttgatgccgtatgacttgtaattaacttt |
2629843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 220
Target Start/End: Original strand, 36357879 - 36358030
Alignment:
| Q |
69 |
aatattaccaattatgtcaattgatgttaatccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgca |
168 |
Q |
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|||||||| |||||||||||||| || ||||| ||||| ||||| || ||||| | |||||||| || ||||| || ||||||||||||| ||| |
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| T |
36357879 |
aatattactgattatgtcaattgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggca |
36357978 |
T |
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| Q |
169 |
gttgtaacaagatcattgttgtttccactgtcagataaagagtcaccaaaaa |
220 |
Q |
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||| | || | |||||||||||||||||| |||||||| || ||||||| |
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| T |
36357979 |
tcggtagctaggttattgttgtttccactgtctgataaagaatctccaaaaa |
36358030 |
T |
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