View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_low_6 (Length: 553)

Name: NF17861_low_6
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_low_6
NF17861_low_6
[»] chr5 (1 HSPs)
chr5 (3-336)||(25358824-25359152)
[»] chr3 (3 HSPs)
chr3 (357-537)||(46941618-46941799)
chr3 (100-213)||(12782723-12782836)
chr3 (3-156)||(24398172-24398326)
[»] chr4 (4 HSPs)
chr4 (1-207)||(23120429-23120635)
chr4 (102-213)||(23619396-23619508)
chr4 (1-70)||(23619510-23619579)
chr4 (38-124)||(14619793-14619880)
[»] chr1 (1 HSPs)
chr1 (4-152)||(49235754-49235904)
[»] chr2 (1 HSPs)
chr2 (3-76)||(18880281-18880354)
[»] scaffold0005 (1 HSPs)
scaffold0005 (38-124)||(197497-197584)
[»] chr8 (3 HSPs)
chr8 (143-217)||(12948022-12948096)
chr8 (139-213)||(15908898-15908972)
chr8 (143-211)||(24618240-24618308)
[»] chr7 (4 HSPs)
chr7 (143-217)||(15819711-15819785)
chr7 (145-213)||(8229537-8229605)
chr7 (176-213)||(37586416-37586453)
chr7 (37-124)||(28068585-28068673)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 25359152 - 25358824
Alignment:
Q  3 gtgtaaaatcgattaaaatacattgaccaccatccaaaaaacatgttcttggtgcatgaactaccggccaacctatgcgagttaaccgcgccatcgacca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |||    
T  25359152 gtgtaaaatcgattaaaatacattgaccaccatccaaaaaacatgttcttggtgcatgaactaccggccaacctgtgtgagttaaccgcgccaccggcca 25359053  T
Q  103 aagatgcgtgagttaactcacgttacatgtatggagagcatgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactgttg 202  Q
    ||| ||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  25359052 aaggtgcatgagttaactcacgttacatgtatggggagcgtgagttaactcacgcatgggtaaaaatgtcttctcagttgggaacgaggaaaaactgttg 25358953  T
Q  203 ggtaaagagcataatatattcttgttagttaacccttgtcgcggtggatttcccgatcccaactcacataaatatcttttttgtttagggagcatagata 302  Q
    | |||||||||||    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||    
T  25358952 gataaagagcata----attcttgttagttaacccttctcccggtggatttcccgatcccaactcacataaatatctttttt-tttagagagcataaata 25358858  T
Q  303 ttttcttacataaacaaaaaagaatatagaaatt 336  Q
    ||||||||||||||||||||||||||||||||||    
T  25358857 ttttcttacataaacaaaaaagaatatagaaatt 25358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 357 - 537
Target Start/End: Complemental strand, 46941799 - 46941618
Alignment:
Q  357 gaataccatctggactttttaaaaaa-tcatatttaacttataaaaaactatttctacgtgtgaagtttaccctttttctttaaagcaaatagaagttat 455  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46941799 gaataccatctggactttttaaaaaaatcatatttagcttataaaaaactatttctacgtgtgaagtttaccctttttctttaaagcaaatagaagttat 46941700  T
Q  456 ttctatgatataaaatgaaatgttgttatagtgatggcgtatagattgtaagctatatttcgataatttacactagtcatga 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46941699 ttctatgatataaaatgaaatgttgttatagtgatggcgtatagattgtaagctatatttcgataatttacactagtcatga 46941618  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 12782723 - 12782836
Alignment:
Q  100 ccaaagatgcgtgagttaactcacgttacatgtatggagagcatgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactg 199  Q
    |||||| |||||||||||||| ||||| |||| |||| |||| |||||||||||||||| |||||||||| | || ||||||||||||||| |||||||     
T  12782723 ccaaaggtgcgtgagttaactaacgttgcatgcatggggagcgtgagttaactcacgtaggggtaaaaatatcttttcagttgggaacgagaaaaaacta 12782822  T
Q  200 ttgggtaaagagca 213  Q
    || |||||||||||    
T  12782823 ttaggtaaagagca 12782836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 24398326 - 24398172
Alignment:
Q  3 gtgtaaaatcgattaaaatacattgaccaccatcca-aaaaacatgttcttggtgcatgaactaccggccaacctatgcgagttaac-cgcgccatcgac 100  Q
    |||| ||||| ||||||| ||||||| |||| |||| |||||| |||| | ||| ||| ||| || || || |||||| |||||||| |  |||| ||||    
T  24398326 gtgtgaaatccattaaaaaacattgatcaccgtccagaaaaacgtgttatgggttcat-aacaactggtcatcctatgtgagttaactcatgccaccgac 24398228  T
Q  101 caaagatgcgtgagttaactcacgttacatgtatggagagcatgagttaactcacg 156  Q
    ||||| |||||||||||||||||||| |||| |||| ||   ||||||||||||||    
T  24398227 caaaggtgcgtgagttaactcacgttgcatgcatggtgatagtgagttaactcacg 24398172  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23120635 - 23120429
Alignment:
Q  1 aagtgtaaaatcgattaaaatacattgaccaccatccaaaaaacatgttcttggtgcatgaactaccggccaacctatgcgagttaac-cgcgccatcga 99  Q
    |||||||| ||| |||||||||||||||||||  |||||||| | |||||||||| ||||||||||| |||||||| ||  ||||||  | ||||| ||     
T  23120635 aagtgtaatatcaattaaaatacattgaccacg-tccaaaaagcgtgttcttggtacatgaactacctgccaacctgtgtaagttaaatcacgccaccgg 23120537  T
Q  100 ccaaagatgcgtgagttaactcacgttacatgtatggagagcatgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactg 199  Q
    |||||  | |||||||||||||||||| |||| ||||  ||| |||||||||||||    | |||||||||| || ||||||||||||||  ||||||||    
T  23120536 ccaaaactacgtgagttaactcacgttgcatgcatgggaagcgtgagttaactcacactggagtaaaaatgtcttttcagttgggaacgaacaaaaactg 23120437  T
Q  200 ttgggtaa 207  Q
    ||||||||    
T  23120436 ttgggtaa 23120429  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 23619508 - 23619396
Alignment:
Q  102 aaagatgcgtgagttaactcacgttacatgtatggagagcatgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgag-gaaaaactgt 200  Q
    |||| |||| ||||||||||| ||| ||||||||| |||| |||||||||||| ||| |  ||||||||| || |||||||||||| ||  ||||| |||    
T  23619508 aaaggtgcgagagttaactcatgttgcatgtatggggagcgtgagttaactcatgtaggaataaaaatgtcttttcagttgggaacaagcaaaaaaatgt 23619409  T
Q  201 tgggtaaagagca 213  Q
    |||||||||||||    
T  23619408 tgggtaaagagca 23619396  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 23619579 - 23619510
Alignment:
Q  1 aagtgtaaaatcgattaaaatacattgaccaccatccaaaaaacatgttcttggtgcatgaactaccggc 70  Q
    |||||||||| | |||||||| ||||||| ||| || ||||||| ||||||| |||||||||||||||||    
T  23619579 aagtgtaaaaaccattaaaatgcattgactaccgtctaaaaaacgtgttcttagtgcatgaactaccggc 23619510  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 14619793 - 14619880
Alignment:
Q  38 aaaaaacatgttcttggtgcatgaactaccggccaacctatgcgagttaac-cgcgccatcgaccaaagatgcgtgagttaactcacg 124  Q
    ||||||| ||||||| || ||||||| ||||||||||||  | |||||||| | ||| | |||||||||||||||||||||| |||||    
T  14619793 aaaaaacgtgttctttgttcatgaaccaccggccaacctgcgtgagttaactcacgcaaccgaccaaagatgcgtgagttaagtcacg 14619880  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 49235754 - 49235904
Alignment:
Q  4 tgtaaaatcgattaaaatacattgaccaccatccaaaaaa-catgttcttggtgcatgaactaccggccaacctatgcgagttaac-cgcgccatcgacc 101  Q
    ||||||||| |||||| | ||||| ||||| ||||||||| |  ||||||||||||||||||||||||||| ||  |||||||||| | ||| |||| ||    
T  49235754 tgtaaaatcaattaaatttcattggccaccgtccaaaaaaacgagttcttggtgcatgaactaccggccaatctgcgcgagttaactcacgctatcggcc 49235853  T
Q  102 aaagatgcgtgagttaactcacgttacatgtatggagagcatgagttaact 152  Q
    |||| || ||||||||||||||||| |||| |||   ||| ||||||||||    
T  49235854 aaaggtgtgtgagttaactcacgttgcatgcatgagtagcgtgagttaact 49235904  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 18880281 - 18880354
Alignment:
Q  3 gtgtaaaatcgattaaaatacattgaccaccatccaaaaaacatgttcttggtgcatgaactaccggccaacct 76  Q
    |||||||||| ||||||| |  ||||||||| ||||||||||||| | || || ||||||||||||||||||||    
T  18880281 gtgtaaaatcaattaaaaaagcttgaccaccgtccaaaaaacatgctatttgttcatgaactaccggccaacct 18880354  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 197584 - 197497
Alignment:
Q  38 aaaaaacatgttcttggtgcatgaactaccggccaacctatgcgagttaac-cgcgccatcgaccaaagatgcgtgagttaactcacg 124  Q
    ||||||| ||||||| || ||||||| ||||||||||||  | |||||||| | ||| | |||||||||||||||||||||| |||||    
T  197584 aaaaaacgtgttctttgttcatgaaccaccggccaacctgcgtgagttaactcacgcaaccgaccaaagatgcgtgagttaagtcacg 197497  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 12948022 - 12948096
Alignment:
Q  143 tgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactgttgggtaaagagcataat 217  Q
    ||||||||||| |||| |||||||| |||  | ||| ||||||| ||| |||||||||| |||||||||||||||    
T  12948022 tgagttaactcgcgtaggggtaaaattgtcatttcaattgggaatgagcaaaaactgttaggtaaagagcataat 12948096  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 15908972 - 15908898
Alignment:
Q  139 agcatgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactgttgggtaaagagca 213  Q
    |||||||||||||||| | ||||||||   ||| || ||||||||||||||| |||||| ||| | |||||||||    
T  15908972 agcatgagttaactcatgcatgggtaattttgtcttttcagttgggaacgagcaaaaacagttagataaagagca 15908898  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 24618240 - 24618308
Alignment:
Q  143 tgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactgttgggtaaagag 211  Q
    |||||||||||||  | || || |||||| || ||||||||||||||  ||| ||||||||||||||||    
T  24618240 tgagttaactcacacagggatataaatgtcttttcagttgggaacgaccaaacactgttgggtaaagag 24618308  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 15819785 - 15819711
Alignment:
Q  143 tgagttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactgttgggtaaagagcataat 217  Q
    |||||||||||||| |||||||  | ||| || ||| ||||||||||| ||||| ||||||||||||| ||||||    
T  15819785 tgagttaactcacgcatgggtattattgtcttttcaattgggaacgagcaaaaagtgttgggtaaagaacataat 15819711  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 8229605 - 8229537
Alignment:
Q  145 agttaactcacgtatgggtaaaaatgtattctcagttgggaacgaggaaaaactgttgggtaaagagca 213  Q
    |||||||| ||||| | |||||| ||| || ||||||| ||| ||| ||||||||||||||||||||||    
T  8229605 agttaacttacgtaggtgtaaaattgtcttttcagttgagaatgagaaaaaactgttgggtaaagagca 8229537  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 37586453 - 37586416
Alignment:
Q  176 tcagttgggaacgaggaaaaactgttgggtaaagagca 213  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  37586453 tcagttgggaacgaggaaaaacagttgggtgaagagca 37586416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 28068585 - 28068673
Alignment:
Q  37 caaaaaacatgttcttggtgcatgaactaccggccaacctatgcgagttaac-cgcgccatcgaccaaagatgcgtgagttaactcacg 124  Q
    ||||||| ||||||||||||||||||| |||| |||  ||  | ||||||||  |||||| || ||||| |||||||| ||||||||||    
T  28068585 caaaaaatatgttcttggtgcatgaaccaccgtccatactgcgtgagttaacatgcgccaccggccaaaaatgcgtgacttaactcacg 28068673  T

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