View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_61 (Length: 227)
Name: NF17861_low_61
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_61 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 33720369 - 33720583
Alignment:
| Q |
4 |
gtcttgcaaatttgcatatggtggtattctttagaactttgaacccttcattcactccaatacaaaggctttccccataaatcaaatgttgcaaataaat |
103 |
Q |
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| T |
33720369 |
gtcttgcaaatttgcatattgt---attctttagaattttgaacccttcaatcactccaatacaaaggctttccccagaaatcaaatgttgcaaataaat |
33720465 |
T |
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| Q |
104 |
ccaattactcaatataaacaatatgttaaggaagagattgtgatagataaagagaaattgtgaaaaaatttgaggatagaaagtctaatgttaatgaaaa |
203 |
Q |
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| T |
33720466 |
ccaattactccatagaaacattatgttaaggaagagattgtgatagataaagagaaattttggaaaaatttgaggatagaaagtctaatgttaatgaaaa |
33720565 |
T |
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| Q |
204 |
ggagctttcagatgatac |
221 |
Q |
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| T |
33720566 |
ggagctttcagatgatac |
33720583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 21147260 - 21147329
Alignment:
| Q |
138 |
agattgtgatagataaagagaaattgtgaaaaaatttgaggatagaaagtctaatgttaatgaaaaggag |
207 |
Q |
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| T |
21147260 |
agattgtgatagagaaagagaaattgacgaaaaagttgagaatagaaagtctaatgttaaggaagaggag |
21147329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 21213662 - 21213710
Alignment:
| Q |
31 |
tctttagaactttgaacccttcattcactccaatacaaaggctttcccc |
79 |
Q |
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| T |
21213662 |
tctttagaactttgaaccattcaatcactccaatcctaaggctttcccc |
21213710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 21212452 - 21212523
Alignment:
| Q |
138 |
agattgtgatagataaagagaaattg-tgaaaaaatttgaggatag-aaagtctaatgttaatgaaaaggag |
207 |
Q |
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| T |
21212452 |
agattgtgatagagaaagagaaattgaggaaaaaagttgagaatagaaaagtctaatgttaaggaataggag |
21212523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 21184361 - 21184423
Alignment:
| Q |
145 |
gatagataaagagaaattgtgaaaaaatttgaggatagaaagtctaatgttaatgaaaaggag |
207 |
Q |
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| T |
21184361 |
gatagagaaagagaaattgaggaaaaagttgagaatagaaagtctgatgttaaggaagaggag |
21184423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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