View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_9 (Length: 513)
Name: NF17861_low_9
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 53514987 - 53514509
Alignment:
| Q |
18 |
tgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514987 |
tgtaagcataggctaggctcatggaaaattaaattatatgacaatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatac |
53514888 |
T |
|
| Q |
118 |
acgaaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
53514887 |
acgaaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgagtggagatctttctttttatattttttttaaatgagagagatctt |
53514788 |
T |
|
| Q |
218 |
aaactgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
317 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514787 |
aaactgttggaatctatattgtatta----aaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
53514692 |
T |
|
| Q |
318 |
cctttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgcctatgcttgtg-nnnnnnngtattggttccaataa |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53514691 |
cctttcatggcaagatcacttgttgtcgatggcgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgttttttttgtattggttccaataa |
53514592 |
T |
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| Q |
417 |
ttgtagatcattttctttttcatgtacattttcttgagaaatgtgtccagtggtaatgcattacttttgatatatcccctgcct |
500 |
Q |
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| T |
53514591 |
ttgtagatcattttctttttcatgtacattttcttgagaaatgtgtccagtggtaatgca-tacttttgatatatcccctgcct |
53514509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 53511286 - 53510938
Alignment:
| Q |
18 |
tgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatac |
117 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
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| T |
53511286 |
tgtaagcataggctagggtcatggaaaattaaactatacaaagatagaggtttttcatggtagttaatgataaaagaaaatctagtattcatattcatac |
53511187 |
T |
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| Q |
118 |
acgaaatattcagattgcaggaaacttaaactttccgaaagactccagagtttgaatggagatctttctttttatannnnnnnnaaatgagagagatctt |
217 |
Q |
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| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||| |
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| T |
53511186 |
atggaatattcagattgcaggaaacttgaactttctgaaagactccagagtttgagtggagatcttagtttt------------aaatgagagagatctt |
53511099 |
T |
|
| Q |
218 |
aaactgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
317 |
Q |
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||||||||||||| |||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53511098 |
aaactgttggaatttatattgtat----taaaatgtccacttttcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
53511003 |
T |
|
| Q |
318 |
cctttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgc |
382 |
Q |
| |
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||||||||| ||||||| |||||||| ||||| | |||||| ||| || ||||||||||||||| |
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| T |
53511002 |
cctttcatgacaagatcgcttgttgttgatggcttgactggaaagggtagagaaagcaggtttgc |
53510938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 253 - 393
Target Start/End: Complemental strand, 53525187 - 53525047
Alignment:
| Q |
253 |
tccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcacttgttgtcgatggtgt |
352 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |
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| T |
53525187 |
tccattctgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatgcaaaggtcacttgttgtcgatggcgt |
53525088 |
T |
|
| Q |
353 |
aactggagaggttaaagaaagcaggtttgcctatgcttgtg |
393 |
Q |
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||| ||| ||| || | || |||||||||||||||||||| |
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| T |
53525087 |
aaccggacagggtatactaaacaggtttgcctatgcttgtg |
53525047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 217 - 496
Target Start/End: Complemental strand, 53548837 - 53548554
Alignment:
| Q |
217 |
taaactgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaa |
316 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| || ||| | |||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
53548837 |
taaactgttggaatttatattgtatta----aaatgtcaattcttcctaccattgtgaacagtccaaagaagaatgtgagcatttgatcaatctggccaa |
53548742 |
T |
|
| Q |
317 |
gcctttcatggcaagatcacttgttgtcgatggtgtaactggagaggttaaagaaagcaggtttgcctatgcttgtgnnnnnnngtattggttccaataa |
416 |
Q |
| |
|
||||||| |||||| |||| ||| |||||| | |||||| || || ||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
53548741 |
gcctttcttggcaaaatcaagtgtcgtcgatagcaagactggaaagagtacagaaagcaggtttgcctttgcttgtgtttttttgtatcggttccaataa |
53548642 |
T |
|
| Q |
417 |
ttgtagatcattttcttttt------catgtacattttcttgagaaa--tgtgtccagtggtaatgcattacttttgatatatcccct |
496 |
Q |
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|||||||||||||| ||||| ||| || ||||||||||| | ||||| ||||||||||||||||| | |||||||||||| |
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| T |
53548641 |
ttgtagatcatttttttttttctttccataaaccttttcttgagagactagtgtctagtggtaatgcattactctagatatatcccct |
53548554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 336
Target Start/End: Complemental strand, 20197384 - 20197301
Alignment:
| Q |
253 |
tccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaagcctttcatggcaagatcac |
336 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||| |||||||| |
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| T |
20197384 |
tccattatgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaaacttggcaagccttacttggaaagatcac |
20197301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 53525448 - 53525323
Alignment:
| Q |
18 |
tgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggttagtgataaaagaaaatctagtattcacattcatac |
117 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || || |||||||| ||||| |||||||| | |||||||||||||||| |||||||| |
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| T |
53525448 |
tgtaagcataggctaggctcatgggaaattaaattgtacgaagatagagggttttctgggtggttaat-ataaaagaaaatctag-----gtattcatac |
53525355 |
T |
|
| Q |
118 |
acgaaatattcagattgcaggaaacttaaact |
149 |
Q |
| |
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| | |||||||||||||||| |||||| |||| |
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|
| T |
53525354 |
atggaatattcagattgcagtaaacttgaact |
53525323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 53549056 - 53548992
Alignment:
| Q |
18 |
tgtaagcataggctaggctcatggaaaattaaattatatgacgatagaggtttttcatggtggtt |
82 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| ||||||| |
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|
| T |
53549056 |
tgtaagcataggctaggctcatggaaaactaaattgtatgaagatagaggttgttctgggtggtt |
53548992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 498
Target Start/End: Complemental strand, 53510929 - 53510860
Alignment:
| Q |
432 |
tttttcatgtacattttcttgaga-aat-gtgtcc-agtggtaatgcattacttttgatatatcccctgc |
498 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
53510929 |
tttttcatgtacattttcttgagagaatagtgtcttagtggtaatgcattacttttaatatatcccctgc |
53510860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 20197565 - 20197525
Alignment:
| Q |
18 |
tgtaagcataggctaggctcatggaaaattaaattatatga |
58 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||||||| |
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| T |
20197565 |
tgtaagcataggctatgctcatggaaaattaagttatatga |
20197525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 16608400 - 16608492
Alignment:
| Q |
221 |
ctgttggaatctatattgtattatataaaacctccattttgcctatcattttgaacagtcaaaagaagaatgtgagcatttgatcaatcttgccaag |
317 |
Q |
| |
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|||||||||| |||||||||||| ||| || ||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
16608400 |
ctgttggaatttatattgtatta----aaatgtctattatgcctatcattttgtacaatcaaaataagaatgtgagcatttgatcaatcttgccaag |
16608492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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