View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_high_12 (Length: 300)
Name: NF17862_high_12
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 34305145 - 34305429
Alignment:
| Q |
1 |
gaaaaaacattcaccatggaggcaaattgatgaatttgataatgatgttagtttttcatgcaaatattgcgacgggaatcatgaattgggtttattttgt |
100 |
Q |
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| T |
34305145 |
gaaaaaacattcactatggaggcaaattgatgaatttgataatgatgttagtttttcatgcaaatattgcgacgggaatcatgaattgggtttattttgt |
34305244 |
T |
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| Q |
101 |
aagttgtttcaagtctaattaatattcttggttaaagttgttttctgttcctcaattttttattcaatattaacattgtagaacctcaaaaaatgaagtt |
200 |
Q |
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| T |
34305245 |
aagttgtttcaagtctaattaatattcttggttaaagttgttttctgttcctcaatttttgattcaatattaacattgtagaacctcaaaaaatgaagtt |
34305344 |
T |
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| Q |
201 |
tagtttattattcttggttcaacttgtttttatttatgtttagttcttatttccctccaaaatagttgttattcttcctttgtgtt |
286 |
Q |
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| T |
34305345 |
tag-ttattattcttggttcaacttgtttttatttatgtttagttgttatttccctccaaaaaagttgttattcttcctttgtgtt |
34305429 |
T |
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 14573290 - 14573384
Alignment:
| Q |
27 |
ttgatgaatttgataatga---tgttagtttttcatgcaaatattgcgacgggaatcatgaattgggtttattttgtaagttgtttcaagtctaa |
118 |
Q |
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||||||||||||||||||| |||| || |||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||| |||||| |
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| T |
14573290 |
ttgatgaatttgataatgaagatgttggtgtttcatgcaaatattgcgacggaaattatgaattgagtttattttgtaagatgtttcacgtctaa |
14573384 |
T |
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