View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17862_high_19 (Length: 242)
Name: NF17862_high_19
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8335075 - 8334871
Alignment:
| Q |
1 |
gtgtcatgtatttcctattgatgtttagtttcagcaagatgtaacataaataattgactcctatgttcaaattattctatatatcctataattaccatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
8335075 |
gtgtcatgtatttcctattgatgtttagttttagcaggatgtaacataaataattgactcctatgttcatattattatatatatcctataattaccatgt |
8334976 |
T |
|
| Q |
101 |
tttcatacccgaagcctctacccaatgaataccatgttctttgatgttcggttatggggaaaaaacttggcgagcccaatattagttaattttcaacttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
8334975 |
tttcatacccgaagcctctacccaatgaataccatgttctttgatgttcggttatgggaaaaaaactttgcgagcccaatattagttagttttcaacttt |
8334876 |
T |
|
| Q |
201 |
gcatt |
205 |
Q |
| |
|
||||| |
|
|
| T |
8334875 |
gcatt |
8334871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26231132 - 26231265
Alignment:
| Q |
1 |
gtgtcatgtatttcctattgatgtttagtttcagcaagatgtaacataaataattgactcctatgttcaaattattctatatatcctataattaccatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26231132 |
gtgtcatgtatttcctattgatgtttagttttagcaggatgtaacataaataattgactcctatgttcaaattattctatgtatcctataattaccatgt |
26231231 |
T |
|
| Q |
101 |
tttcatacccgaagcctctacccaatgaatacca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26231232 |
tttcatacccgaagcctctacccaatgaatacca |
26231265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 33550756 - 33550889
Alignment:
| Q |
1 |
gtgtcatgtatttcctattgatgtttagtttcagcaagatgtaacataaataattgactcctatgttcaaattattctatatatcctataattaccatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33550756 |
gtgtcatgtatttcctattgatgtttagttttagcagaatgtaacataactcattgactcctatgttcaaattattctatgtatcctataattaccatgt |
33550855 |
T |
|
| Q |
101 |
tttcatacccgaagcctctacccaatgaatacca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33550856 |
tttcatacccgaagcctctacccaatgaatacca |
33550889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4684507 - 4684374
Alignment:
| Q |
1 |
gtgtcatgtatttcctattgatgtttagtttcagcaagatgtaacataaataattgactcctatgttcaaattattctatatatcctataattaccatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4684507 |
gtgtcatgtatttcctattgatgtttagttttagcatgatgtaacataaataattgactcctatgttcaaattattctatgtatcctataattaccatgt |
4684408 |
T |
|
| Q |
101 |
tttcatacccgaagcctctacccaatgaatacca |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
4684407 |
tttcatacccgaagcctctacccaatgaatacca |
4684374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University