View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_high_2 (Length: 661)
Name: NF17862_high_2
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 9 - 645
Target Start/End: Original strand, 42214136 - 42214772
Alignment:
| Q |
9 |
cagacgaaggcttgccaagttactgggactccttgctcaaacttgaagaggaagacaatgtgtggattttggacaaagcaagttactcgcattctttact |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214136 |
cagacgtaggcttgccaagttactgggactccttgctcaaacttgaagaggaagacaatgtgtggattttggacaaagcaagttactcgcattctttact |
42214235 |
T |
|
| Q |
109 |
aagtcttgaagaggaagactctgcatggttctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctttcaccgatatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214236 |
aagtcttgaagaggaagactctgcatggctctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctttcaccgatatc |
42214335 |
T |
|
| Q |
209 |
tcagatgtaggcacacctagttactgggactccttgctcagacttgaagaggaagacaatgagtggatttcaggttcaaaacaaggactacagtgtgtcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214336 |
tcagatgtaggcacacctagttactgggactccttgctcagacttgaaaaggaagacaatgagtggatttcaggttcaaaacaaggactacagtgtgtcc |
42214435 |
T |
|
| Q |
309 |
aacatggttctccaatctcatcatataaggtaaattggggtaccgaggttcttccttcagtctctacgtcttcattcactgaagcacattgtgaaaagcc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214436 |
aacatggttctccaatctcatcatataaggtaaattggggtgccgaggttcttccttcagtctctacgtcttcattcactgaagcacattgtgaaaagcc |
42214535 |
T |
|
| Q |
409 |
agatgttttttcagcagaacattggatagaaactgcagacgcagaagagttgaatgatgatgaaccacttttttggccatttaaaggggaatttaattgg |
508 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
42214536 |
agatgttttttcagcagaacatcggatagaaactgcagacacagaagagttgaatggtgatgaaccacttttttggccatttaaaggggaatttagttgg |
42214635 |
T |
|
| Q |
509 |
gattctgaggagagctcattttgtagctcacctaggaaaagacttgttttcgactctggatcaactgcatctcggataaagagggatgaacaaaaaggtg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214636 |
gattctgaggagagctcattttgtagctcacctaggaaaagacttgttttcgactctggatcaactgcatctcggataaagagggatgaacaaaaaggtg |
42214735 |
T |
|
| Q |
609 |
atgatgattttgattcaagcattgttttggacaaaga |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
42214736 |
atgatgattttgattcaagcattgttttggacaaaga |
42214772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 627
Target Start/End: Original strand, 42207313 - 42207927
Alignment:
| Q |
16 |
aggcttgccaagttactgggactccttgctcaaacttgaagaggaagacaatgtgtggattttggacaaagcaagttactcgcattctttactaagtctt |
115 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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|
| T |
42207313 |
aggcttgccaagttactgggagtccttgatcaaacttgacga---agacaatgtgtggattttggacagagcaagttatacgcattctttactaagtctt |
42207409 |
T |
|
| Q |
116 |
gaagaggaagactctgcatggttctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctttcaccgatatctcagatg |
215 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| ||| || | ||||||||||||||||||| | | |
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| T |
42207410 |
gaagaggaagactctgcatggctctcagattcaatgatccatgagggcccttctagtcctctaagctacaacggcgattctttcaccgatatctcaaacg |
42207509 |
T |
|
| Q |
216 |
taggcacacctagttactgggactccttgctcagacttgaagaggaagacaatgagtggatttcaggttcaaaacaaggactacagtgtgtccaacatgg |
315 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||| ||| ||||||| |||| |
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|
| T |
42207510 |
gaggcacacctagttattgggactccttgctcaggcttgaagaggaagacaacaagtggatttcagactcaaaacaagaactgaagtatgtccaagatgg |
42207609 |
T |
|
| Q |
316 |
ttctccaatctcatcatataaggtaaattggggtaccgaggttcttccttcagtctctac---gtcttcattcactgaagcacattgtgaaaagcc---a |
409 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| | |||||||||||||||||||||||| |||||||||| || | |||| |||| ||| | | |
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|
| T |
42207610 |
ttctccaatctcatcttataagataaattggggcatcgaggttcttccttcagtctctactatatcttcattcattggaacacactgtggcaagtcagaa |
42207709 |
T |
|
| Q |
410 |
gatgttttttcagcagaacattggatagaaactgcagacgcagaagagttgaatgatgatgaaccacttttttggccatttaaaggggaatttaattggg |
509 |
Q |
| |
|
|||| |||||||||||||||| | ||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||| |
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| T |
42207710 |
gatgctttttcagcagaacatctgttagaaaccacagacatagaagagttgaatggcgatgagccacttttttggccatttgaaggggaattcaattggg |
42207809 |
T |
|
| Q |
510 |
attctgaggagagctcattttgtagctcacctaggaaaagacttgttttcgactctggatcaactgcatctcggataaagagggatgaacaaaaaggtga |
609 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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|
| T |
42207810 |
attctgaggaaagctcattctgtagctcacctagtaaaagacttgttttcgactctagatcaaccgcatctcggataaagggggatgaacaaaaaggtga |
42207909 |
T |
|
| Q |
610 |
tgatgattttgattcaag |
627 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
42207910 |
tgaggattttgattcaag |
42207927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 42213949 - 42214204
Alignment:
| Q |
23 |
ccaagttactgggactccttgctcaaacttgaagaggaagacaatgtgtggattttggacaaagcaagttactcgcattctttactaagtcttgaagagg |
122 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42213949 |
ccaagttattggaactccttgctcaaatttgaagaggaagacagtgattggattttggataaagcaagttactcgcattctttactaagtcttgaagagg |
42214048 |
T |
|
| Q |
123 |
aagactctgcatggttctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctttcaccgatatctcagatgtaggcac |
222 |
Q |
| |
|
||||||||| |||| | |||||||||||| | |||||| | ||||| ||||||||||||| |||||||| |||||||| | | |||||||| |||||| |
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|
| T |
42214049 |
aagactctgaatggctttcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctttcagcaagatctcagacgtaggctt |
42214148 |
T |
|
| Q |
223 |
acctagttactgggactccttgctcagacttgaagaggaagacaatgagtggattt |
278 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
42214149 |
gccaagttactgggactccttgctcaaacttgaagaggaagacaatgtgtggattt |
42214204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 23 - 278
Target Start/End: Original strand, 42207119 - 42207371
Alignment:
| Q |
23 |
ccaagttactgggactccttgctcaaacttgaagaggaagacaatgtgtggattttggacaaagcaagttactcgcattctttactaagtcttgaagagg |
122 |
Q |
| |
|
||||||||| |||||| |||||| |||||| |||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
42207119 |
ccaagttaccgggactacttgctaaaacttaaagaggaagacagtgattggattttggacaaagcaagttactcgaattctttactaagtcttgaagagg |
42207218 |
T |
|
| Q |
123 |
aagactctgcatggttctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctttcaccgatatctcagatgtaggcac |
222 |
Q |
| |
|
||||||||| |||| | |||| ||||||||| |||||| | |||| |||||||||||| || ||||| |||||||| | | ||||| || ||||| |
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|
| T |
42207219 |
aagactctgaatggctttcaggttcaatgatatctgagaatccttatagtcctctaagcctcagtggtgattctttcagcaagatctcggacataggctt |
42207318 |
T |
|
| Q |
223 |
acctagttactgggactccttgctcagacttgaagaggaagacaatgagtggattt |
278 |
Q |
| |
|
|| ||||||||||| |||||| ||| |||| || |||||||||| |||||||| |
|
|
| T |
42207319 |
gccaagttactgggagtccttgatcaaactt---gacgaagacaatgtgtggattt |
42207371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 42213812 - 42214003
Alignment:
| Q |
87 |
caagttactcgcattctttactaagtcttgaagaggaagactctgcatggttctcagattcaatgatctctgaggacccttccagtcctctaagctccaa |
186 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| ||||||||| || |||| |||||||||||||||| |||||| ||||||| | ||||||||||| | |
|
|
| T |
42213812 |
caagttacgggcactctttgctaagtcttgacgaggaagacaatggatggctctcagattcaatgatatctgagaacccttcaactcctctaagctactc |
42213911 |
T |
|
| Q |
187 |
tggtggttctttcaccgatatctcagatgtaggcacacctagttactgggactccttgctcagacttgaagaggaagacaatgagtggattt |
278 |
Q |
| |
|
| | ||||||| ||| ||||||||||| || ||||| ||||| ||| |||||||||||| | ||||||||||||||| ||| ||||||| |
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|
| T |
42213912 |
tcacgattctttctgcgagatctcagatgtgggtacaccaagttattggaactccttgctcaaatttgaagaggaagacagtgattggattt |
42214003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 101 - 278
Target Start/End: Original strand, 42206993 - 42207173
Alignment:
| Q |
101 |
tctttactaagtcttgaagaggaagactctgcatggttct---cagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctt |
197 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||| ||| |||||||||||| ||||| | ||||| | ||||||||||| || ||||| ||||| |
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|
| T |
42206993 |
tctttgctaagtcttgaagaggaagacattgattgggtctcagcagattcaatgacacctgagaatccttcaactcctctaagctacattggtgattctt |
42207092 |
T |
|
| Q |
198 |
tcaccgatatctcagatgtaggcacacctagttactgggactccttgctcagacttgaagaggaagacaatgagtggattt |
278 |
Q |
| |
|
| | || |||||||| |||||||||| |||||| |||||| |||||| | |||| |||||||||||| ||| ||||||| |
|
|
| T |
42207093 |
ttagtgagatctcagacataggcacaccaagttaccgggactacttgctaaaacttaaagaggaagacagtgattggattt |
42207173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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