View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_high_21 (Length: 232)
Name: NF17862_high_21
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 52863433 - 52863632
Alignment:
| Q |
20 |
tgatgtttacacaagatgaagatatagtgaagtgggtgaagaagcagttacaaagaggtttgatttcggagttattggaacctggtttgcttgagattga |
119 |
Q |
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| T |
52863433 |
tgatgtttacacaagatgaagatatagtgaagtgggtgaagaagcagttacaaagaggtttgatttcggagttattggaacctggtttgcttgagattga |
52863532 |
T |
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| Q |
120 |
tcaagaatcatcagaatgggaagagtttttgttaggtgttaaagttgcactactttgcacagcacatgatcctcttgatagaccttctattaatgatatt |
219 |
Q |
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| T |
52863533 |
tcaagaatcatcagaatgggaagagtttttgttaggtgttaaagttgcactactttgcacagcacatgatcctcttgatagaccttctattaatgatatt |
52863632 |
T |
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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 8414528 - 8414709
Alignment:
| Q |
22 |
atgtttacacaagatgaagatatagtgaagtgggtgaagaagcagttacaaagaggtttgatttcggagttattggaacctggtttgcttgagattgatc |
121 |
Q |
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| T |
8414528 |
atgttcacacaagacgaagacattgtgaagtgggtgaagaaacaacttcaaaggggtcaaataacagagttacttgaacctggtttacttgaattagacc |
8414627 |
T |
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| Q |
122 |
aagaatcatcagaatgggaagagtttttgttaggtgttaaagttgcactactttgcacagcacatgatcctcttgatagacc |
203 |
Q |
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| T |
8414628 |
cagaatcatcagaatgggaagagtttttactaggtgtgaaagttggtttgctttgcacagcaccagatcctcttgatcgacc |
8414709 |
T |
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