View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17862_high_3 (Length: 462)
Name: NF17862_high_3
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 33633095 - 33632639
Alignment:
| Q |
1 |
aacagtgttgttagggtgaggcatgattaatttattaagcgaacaataaatttagtcgcacacagacactaccttgttcagacatagtatgataattgcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33633095 |
aacagtgttgttagggtgaggcatgattaatttattaagcgaacaataaatttagttgcacacagacactaccttgttcagacatagtatgataattgtg |
33632996 |
T |
|
| Q |
101 |
atgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632995 |
atgctactttttcttttttgcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgc |
33632896 |
T |
|
| Q |
201 |
ttatcatagtaataaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632895 |
ttatcatagtaataaatcacaactaaaaactatagaacaaggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgattg |
33632796 |
T |
|
| Q |
301 |
tgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632795 |
tgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaaca |
33632696 |
T |
|
| Q |
401 |
aacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttcttgga |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33632695 |
aacaagcactcttacaggtataaaaaagctttgtgtaattggttagattttgttgga |
33632639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 29192861 - 29193307
Alignment:
| Q |
1 |
aacagtgttgttagggtgaggcatgattaatttattaagcgaacaataaatttagtcgcacacagacactaccttgttcagacatagtatgataattgcg |
100 |
Q |
| |
|
|||||||| | |||||| || |||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||||| | |
|
|
| T |
29192861 |
aacagtgtcgctagggtaagacatggttaatttattaagtgaacaataaatctagtcgcacacagacactgccttattcagacatattatgataattgtg |
29192960 |
T |
|
| Q |
101 |
atgctactttttctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgc |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29192961 |
atgctactttt-ctttttggcagattcaaaagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgc |
29193059 |
T |
|
| Q |
201 |
ttatcatagtaa--taaatcacaactaaaaactatagaaccaggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgat |
298 |
Q |
| |
|
||| |||| ||| |||||||||||||||| ||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
29193060 |
ttaacatactaaaataaatcacaactaaaa----tagaaccagcggttgcacttgc---acttataaaaccatagtctttgcttgttgattttttctgat |
29193152 |
T |
|
| Q |
299 |
tgtgttccttcccaggagatcctaaaagataacaaggagccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaa |
398 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29193153 |
tgtgttccttcccaggagatcctgaaagatgacaaggagccggaacctttaaatattgactttggttcagaaatttcgtctcagtcagaatttatgtcaa |
29193252 |
T |
|
| Q |
399 |
caaacaagcactcttacaggtataaaaaagctttgtgtcattggttagattttcttgga |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
29193253 |
caaacaagcactcttacaggtataaaaaag----ttgtcattggttagattttgttgga |
29193307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 130 - 293
Target Start/End: Original strand, 29182893 - 29183063
Alignment:
| Q |
130 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagt--aataaatcacaactaaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
29182893 |
aagtttgctatgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaa |
29182992 |
T |
|
| Q |
228 |
aactatagaaccaggggttgcaatttc---------ttcacttataaaaccatagtatttgcttgttgatttttt |
293 |
Q |
| |
|
|||||||||| ||||||| || | | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29182993 |
----atagaaccagcggttgcacttgcacttgcacttgcacttataaaaccatagtctttgcttgttgatttttt |
29183063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University