View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17862_high_4 (Length: 453)

Name: NF17862_high_4
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17862_high_4
NF17862_high_4
[»] chr2 (13 HSPs)
chr2 (77-370)||(9181956-9182246)
chr2 (77-370)||(30654159-30654452)
chr2 (77-370)||(17971903-17972201)
chr2 (77-370)||(30649460-30649770)
chr2 (77-372)||(30616213-30616506)
chr2 (180-357)||(40036031-40036209)
chr2 (138-314)||(28450564-28450739)
chr2 (266-370)||(25480102-25480207)
chr2 (266-370)||(25487708-25487813)
chr2 (201-307)||(27417479-27417585)
chr2 (91-244)||(3174037-3174187)
chr2 (204-244)||(25480210-25480250)
chr2 (204-244)||(25487816-25487856)
[»] chr3 (8 HSPs)
chr3 (76-370)||(8886496-8886790)
chr3 (78-370)||(23662651-23662943)
chr3 (77-315)||(18470485-18470739)
chr3 (77-304)||(3686657-3686900)
chr3 (77-316)||(12967113-12967367)
chr3 (77-370)||(24755737-24756011)
chr3 (77-370)||(24764734-24765008)
chr3 (136-367)||(48434689-48434921)
[»] chr5 (13 HSPs)
chr5 (77-370)||(560037-560330)
chr5 (77-370)||(9911892-9912178)
chr5 (77-370)||(26670549-26670859)
chr5 (77-370)||(26942146-26942456)
chr5 (136-371)||(39521774-39522009)
chr5 (77-370)||(36938730-36939040)
chr5 (76-376)||(41999975-42000290)
chr5 (77-315)||(36426912-36427166)
chr5 (180-312)||(13585035-13585167)
chr5 (77-127)||(39521698-39521748)
chr5 (277-370)||(23978696-23978790)
chr5 (180-315)||(17507719-17507854)
chr5 (180-315)||(24773672-24773807)
[»] scaffold0045 (1 HSPs)
scaffold0045 (119-370)||(81653-81896)
[»] chr8 (14 HSPs)
chr8 (77-370)||(8319869-8320156)
chr8 (77-370)||(4239558-4239856)
chr8 (77-370)||(25368973-25369262)
chr8 (77-370)||(40127111-40127421)
chr8 (77-369)||(23083114-23083411)
chr8 (183-315)||(38183897-38184029)
chr8 (180-302)||(17023623-17023744)
chr8 (180-302)||(17554116-17554237)
chr8 (183-313)||(34117025-34117155)
chr8 (131-248)||(4539858-4539975)
chr8 (176-367)||(19952762-19952954)
chr8 (77-132)||(17023505-17023560)
chr8 (77-132)||(17553998-17554053)
chr8 (77-125)||(38184073-38184120)
[»] chr1 (6 HSPs)
chr1 (77-370)||(25853676-25853971)
chr1 (78-370)||(10138571-10138884)
chr1 (224-374)||(16749979-16750129)
chr1 (207-318)||(47453452-47453563)
chr1 (180-315)||(18809820-18809953)
chr1 (180-315)||(5727762-5727897)
[»] chr4 (11 HSPs)
chr4 (78-370)||(31272042-31272336)
chr4 (78-366)||(37261101-37261389)
chr4 (71-370)||(19105280-19105593)
chr4 (183-315)||(32222458-32222590)
chr4 (183-315)||(33465615-33465747)
chr4 (199-315)||(39319071-39319187)
chr4 (208-347)||(41815422-41815556)
chr4 (121-307)||(16951137-16951322)
chr4 (77-141)||(33465816-33465880)
chr4 (77-133)||(39318923-39318980)
chr4 (183-237)||(15134740-15134794)
[»] scaffold0468 (1 HSPs)
scaffold0468 (78-370)||(422-712)
[»] scaffold0060 (1 HSPs)
scaffold0060 (77-370)||(49261-49554)
[»] scaffold0070 (2 HSPs)
scaffold0070 (77-370)||(61861-62150)
scaffold0070 (77-110)||(66063-66096)
[»] chr7 (7 HSPs)
chr7 (183-371)||(21667959-21668148)
chr7 (212-315)||(24147789-24147892)
chr7 (208-315)||(10389632-10389739)
chr7 (195-310)||(15984856-15984971)
chr7 (143-313)||(1289622-1289789)
chr7 (77-125)||(21667830-21667878)
chr7 (76-141)||(10389827-10389892)
[»] chr6 (5 HSPs)
chr6 (77-315)||(15997909-15998146)
chr6 (77-120)||(16836324-16836367)
chr6 (180-309)||(17285166-17285295)
chr6 (180-286)||(10490784-10490890)
chr6 (176-248)||(14776891-14776963)
[»] scaffold0067 (1 HSPs)
scaffold0067 (206-289)||(31016-31099)
[»] scaffold0204 (1 HSPs)
scaffold0204 (400-435)||(16690-16725)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 9182246 - 9181956
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||||||||||||||||||||||||||| |  || ||| |||||||||| || ||||||||||||||||||| |||||||||||||| ||||||    
T  9182246 gtgatcagatatagtgcccccactagttcttaatatacaagagg-aatttagttttcccccactagtgcccccactat-tctttaatttacgggggtact 9182149  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
    || || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| | |||||||||    
T  9182148 tactt-catagaaatcaacatcttttaattctatgatcactttaacatttaggtcataaaacctacatgcttcattatttataacatacctaatgaatac 9182050  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| || | ||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  9182049 acattcataggctctattggtgagtttatctctcttgggttcgaaattcgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 9181956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 30654159 - 30654452
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||   | ||||      
T  30654159 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaaa 30654257  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
    || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||||||     
T  30654258 tatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatat 30654357  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||| ||||||||||||||||||||||||||||||||||||    
T  30654358 acattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatatttcagacaatcccaagttcaaaaaataagacaagttg 30654452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 17972201 - 17971903
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 171  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||     ||||||||||||| |||||| |||   | |    
T  17972201 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgcccccactat-tctttagtttcaaggg 17972103  T
Q  172 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg 271  Q
    |||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||    
T  17972102 gtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatg 17972003  T
Q  272 aatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  17972002 aatatacattcataggctctactagtgagttcaactctcttgggatccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 17971903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 30649460 - 30649770
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  30649460 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 30649558  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  30649559 tagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 30649658  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 358  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  30649659 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 30649758  T
Q  359 taagacaagttg 370  Q
    ||||||||||||    
T  30649759 taagacaagttg 30649770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 77 - 372
Target Start/End: Original strand, 30616213 - 30616506
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||| || |||||||| ||  |||||||||  |||||| |||||||||| || |||||||| |||| ||||| |||||||||||| | |||| |    
T  30616213 gtgatcagatgtaatgcccccaataactcttaattt--aaaaggaaatttagttttcccccactagtacccc-actat-tctttaatttactggggtatt 30616308  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg---aa 273  Q
    || ||| || ||||||  |||| ||| ||||||||||||||||| ||||||| ||| ||||| |||||| || | |||||||| |||| ||||||   ||    
T  30616309 tatttt-attgaaatcaacatcgtttgattctatgatcactttagcatttagatcacaaaacctatatggtttgctatttatatcatacccaatgaaaaa 30616407  T
Q  274 tacacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaact-tatgtcagacaatcccaagttcaaaaaataagacaagttgaa 372  Q
    ||||  ||||||||||||| |||||||||||||||||||| | || |||  | || | || |||| |||||||||||||| |||||||||||||||||||    
T  30616408 tacaatttcataggctttattagtgagtttaactctcttgaggtctaaaattcaaatataggtcaaacaatcccaagttc-aaaaataagacaagttgaa 30616506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 357
Target Start/End: Complemental strand, 40036209 - 40036031
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||||||||| ||||| ||| ||| |||||||||||||  ||||| |||||||| ||||||||||| | |||||| |||||| || |||||||||||    
T  40036209 tttcatagaaatcagcatcatttgattatatgatcactttagaatttatgtcataaaccttatatgctttgctatttaaaacatacccgatgaatacaca 40036110  T
Q  280 ttcataggctttactagtgagtttaactctctt-gggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaa 357  Q
    | |||||||| |||||  ||||||||||||||| ||||  | ||||  ||| || ||||| ||| ||||||||||||||    
T  40036109 tccataggctctactatcgagtttaactctcttagggtctggaatcctaacataggtcaggcaaccccaagttcaaaaa 40036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 314
Target Start/End: Original strand, 28450564 - 28450739
Alignment:
Q  138 actagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaa 237  Q
    ||||||||| ||||||| |||||| ||||  |||||| ||| ||  |||||||||  |||  ||||||| |||| |||||||| ||||||||||||||||    
T  28450564 actagtgccaccactat-tcttta-tttaaagaggtatttatttagatagaaatcaacattgtttaattttatgctcactttagcatttaggtcataaaa 28450661  T
Q  238 -cttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgg 314  Q
     | |||||| |  | ||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||||||||||||    
T  28450662 acctatatgatctgctatttataacatacccaatgaacacacattcacaggctctactagtgagtctaactctcttgg 28450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 25480207 - 25480102
Alignment:
Q  266 ccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagac 364  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||    
T  25480207 ccaatgaatacacattcataggttctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagac 25480108  T
Q  365 aagttg 370  Q
    ||||||    
T  25480107 aagttg 25480102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 25487813 - 25487708
Alignment:
Q  266 ccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagac 364  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||    
T  25487813 ccaatgaatacacattcataggttctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagac 25487714  T
Q  365 aagttg 370  Q
    ||||||    
T  25487713 aagttg 25487708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 27417585 - 27417479
Alignment:
Q  201 ttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgag 300  Q
    |||||||||| ||||||||| ||||| ||||||||||| || |||||| |  ||||||  |||| | |||||||| | ||||||| ||| ||||||||||    
T  27417585 ttaattctataatcactttagcatttcggtcataaaacctagatgctttgcaatttatggcatacctaatgaataaaaattcataagctctactagtgag 27417486  T
Q  301 tttaact 307  Q
    |||||||    
T  27417485 tttaact 27417479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 244
Target Start/End: Complemental strand, 3174187 - 3174037
Alignment:
Q  91 tgcccccactagttcttaatttttaaaaggg-aatttagtttgccaccactagtgcccccactatatctttaatttacggaggtacttaattt-cataga 188  Q
    |||||||||||||||||||| |  ||||||  |||||| |||||| ||||||||||||| ||||| ||||||||||   | |||| || |||| ||||||    
T  3174187 tgcccccactagttcttaatat--aaaaggataatttattttgcctccactagtgcccc-actat-tctttaatttttag-ggtattttattttcataga 3174093  T
Q  189 aatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatat 244  Q
    |||||  ||  ||| |||||||| ||||||||  |||||||||||||||| |||||    
T  3174092 aatcgatattgtttgattctatggtcactttagtatttaggtcataaaacatatat 3174037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 25480250 - 25480210
Alignment:
Q  204 attctatgatcactttaacatttaggtcataaaacttatat 244  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  25480250 attctatgatcactttagcatttaggtcataaaacctatat 25480210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 25487856 - 25487816
Alignment:
Q  204 attctatgatcactttaacatttaggtcataaaacttatat 244  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  25487856 attctatgatcactttagcatttaggtcataaaacctatat 25487816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 76 - 370
Target Start/End: Original strand, 8886496 - 8886790
Alignment:
Q  76 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||| |||||| |||   | ||||     
T  8886496 agtgatcagatatagtgcccccactagttcttaatttttagaaggaaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaa 8886594  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 275  Q
     || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||||||| ||||||||||    
T  8886595 atatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgctatttataacatacccaatgaata 8886694  T
Q  276 cacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
     ||||||||||||| ||||| |||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  8886695 tacattcataggctctactaatgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 8886790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 78 - 370
Target Start/End: Complemental strand, 23662943 - 23662651
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 177  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||  ||||||||||||||||||| |||||| ||||  | ||||  |    
T  23662943 tgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgcccccactat-tctttagtttaaaggggtaaat 23662845  T
Q  178 aatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaataca 277  Q
    | || |||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||||| |    
T  23662844 atttacatagaaatcagcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatata 23662745  T
Q  278 cattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||||||||||| ||||||||||||||||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||| ||||||    
T  23662744 cattcataggctctactagtgagtttaactctcttggggtccagaatctaaatatagtacagacaatcccaagttcaaaaaataagataagttg 23662651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 77 - 315
Target Start/End: Original strand, 18470485 - 18470739
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  18470485 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 18470583  T
Q  160 taatttacggaggtact-taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttat 258  Q
    || || | || |  | | || |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| | |||||    
T  18470584 tagttaaaggggtaaatatattttcatagaaatcgccatcttttaattctatgatcactttagcatttaggtcat-aaacctatatgcttcgctgtttat 18470682  T
Q  259 aacatatccaatgaatacacattcataggctttactagtgagtttaactctcttggg 315  Q
    | |||| | |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  18470683 agcatacctaatgaatacacattcataggctctactagtgagttcaactctcttggg 18470739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 77 - 304
Target Start/End: Original strand, 3686657 - 3686900
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  3686657 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 3686755  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || |||   | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | ||||||||    
T  3686756 tagtttcaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttata 3686855  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagttta 304  Q
     |||| |||||||||| ||||||||||||| ||||||||||||||    
T  3686856 gcatacccaatgaatatacattcataggctctactagtgagttta 3686900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 77 - 316
Target Start/End: Complemental strand, 12967367 - 12967113
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-----------------ctagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||                 ||||| |||||||||| ||||    
T  12967367 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttattttgcccccaataatgttgcgcccccactagttcccccactat-tctt 12967269  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || || |  | ||||  || ||  |||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||| |||||| ||   ||||||||    
T  12967268 tatttaaatg-ggtaaatatttatatagaaatcaacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgattttctatttata 12967170  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggt 316  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  12967169 acatacccaatgaatacacattcataggctctaccagtgagtttaattctcttgggt 12967113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 24756011 - 24755737
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagg-gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| |||||||| ||||||||||| |  | |||| |||||||||||  | ||||||||| ||||||||| |||||||||||| | |||||    
T  24756011 gtgatcagatatactgcccccaatagttcttaatat--acaaggagaatttagtttatccccactagtggccccactat-tctttaatttacaggggtac 24755915  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 275  Q
    ||  || ||||||||||   ||| ||| | | |||||||||||||||||||| || ||||||| |||| ||               ||||||||||||||    
T  24755914 ttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctataagc---------------atatccaatgaata 24755831  T
Q  276 cacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||||||||||| | |||  | |||||||||||||||||||| ||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  24755830 cacattcataggttctaccggcgagtttaactctcttgggtttgaaatccaaacttatgtcaaacaatcccaagtt-aaaaaataagacaagttg 24755737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 24765008 - 24764734
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagg-gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| |||||||| ||||||||||| |  | |||| |||||||||||  | ||||||||| ||||||||| |||||||||||| | |||||    
T  24765008 gtgatcagatatactgcccccaatagttcttaatat--acaaggagaatttagtttatccccactagtggccccactat-tctttaatttacaggggtac 24764912  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 275  Q
    ||  || ||||||||||   ||| ||| | | |||||||||||||||||||| || ||||||| |||| ||               ||||||||||||||    
T  24764911 ttgctt-catagaaatcaatatcgtttgactttatgatcactttaacatttaagttataaaacctataagc---------------atatccaatgaata 24764828  T
Q  276 cacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||||||||||| | |||  | |||||||||||||||||||| ||||||  ||||||||||| ||||||||||||| ||||||||||||||||||    
T  24764827 cacattcataggttctaccggcgagtttaactctcttgggtttgaaatccaaacttatgtcaaacaatcccaagtt-aaaaaataagacaagttg 24764734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 367
Target Start/End: Complemental strand, 48434921 - 48434689
Alignment:
Q  136 ccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataa 235  Q
    ||||||||||||||||||| |  ||||||||  | || | |||||||||||||||||  |||||||| ||||||||||||| | |||||||| |||||||    
T  48434921 ccactagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcttttgattctatgatcacataaacatttaagtcataa 48434822  T
Q  236 aacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttc-gaaatctgaacttatg 334  Q
    |||||||||||||  |  || ||| ||||  |||||||| || ||||| ||||| ||||| ||||||| ||||||||||| || | |||| |||  || |    
T  48434821 aacttatatgctttctagttaatatcatactcaatgaatgcatattcacaggctctactaatgagttttactctcttgggatctggaatccgaatatagg 48434722  T
Q  335 tcagacaatcccaagttcaaaaaataagacaag 367  Q
    ||||| ||| ||||||  |||||||||||||||    
T  48434721 tcagataattccaagtctaaaaaataagacaag 48434689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 560037 - 560330
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |||   | ||||      
T  560037 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactagtgcccccactat-tctttagtttcaaggggtaaa 560135  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
    || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||||||     
T  560136 tatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatgaatat 560235  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  560236 acattcataggctctactagtgagttcaactctcttgggatccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 9911892 - 9912178
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||| ||||||||||||||||  ||||| |  ||  ||||||||| ||| || ||||||||||| ||||||| |||||||||||||| ||||||    
T  9911892 gtgatcagatgtagtgcccccactagtcattaatatacaag-gggaatttaatttacctccactagtgcctccactat-tctttaatttacgggggtact 9911989  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||| |||| ||||||||||||| | ||| |||||    
T  9911990 ta-tttcatagaaatcggcatcttttaattctatgatcactttagcatttaggtcataaaatctatatgtttcgctatttataacatacctaattaatac 9912088  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||||||||| || ||||||| |||||||||   |  |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  9912089 acattcatagactctactagtaagtttaact---tgaggttcgaaatctgaacttatgtcaaacaatcccaagttc-aaaaataagacaagttg 9912178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 26670549 - 26670859
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| ||||    
T  26670549 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgctcccactagtgcccccactat-tctt 26670647  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || ||||  | ||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  26670648 tagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 26670747  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 358  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  26670748 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 26670847  T
Q  359 taagacaagttg 370  Q
    ||||||||||||    
T  26670848 taagacaagttg 26670859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 26942146 - 26942456
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| ||||    
T  26942146 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccgataatgttgtgctcccactagtgcccccactat-tctt 26942244  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || ||||  | ||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  26942245 tagtttaaaggggtaaatatttacatagaaatcggtgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttata 26942344  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 358  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  26942345 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 26942444  T
Q  359 taagacaagttg 370  Q
    ||||||||||||    
T  26942445 taagacaagttg 26942456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 136 - 371
Target Start/End: Original strand, 39521774 - 39522009
Alignment:
Q  136 ccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataa 235  Q
    ||||||||||||||||||| |||||| ||||  | ||||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39521774 ccactagtgcccccactat-tctttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataa 39521872  T
Q  236 aacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatg 334  Q
    ||| |||||| |||| |||||||| |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||      
T  39521873 aacctatatgtttcgctatttatagcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagt 39521972  T
Q  335 tcagacaatcccaagttcaaaaaataagacaagttga 371  Q
     || ||||| |||||||||||||||||||||||||||    
T  39521973 ccacacaattccaagttcaaaaaataagacaagttga 39522009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 36939040 - 36938730
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  36939040 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tctt 36938942  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || |||   | ||||  || || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||| || | ||||||||    
T  36938941 tagtttcgaggggtaaatatttacatagaaatcggcgtcttttaattctataatcactttaacatttaggtcataaagcctatatgttttgctatttata 36938842  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaa 358  Q
     |||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||    
T  36938841 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaa 36938742  T
Q  359 taagacaagttg 370  Q
    ||||||||||||    
T  36938741 taagacaagttg 36938730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 76 - 376
Target Start/End: Original strand, 41999975 - 42000290
Alignment:
Q  76 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatct 158  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| |||    
T  41999975 agtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccactagtgcccccactat-tct 42000073  T
Q  159 ttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttat 258  Q
    ||| ||||  | ||||  || || ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||||| || | |||||||    
T  42000074 ttagtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacat--aggtcataaaacctatatgttttgctatttat 42000171  T
Q  259 aacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaa 357  Q
    | |||| |||||||||| |||||||||| || |||||||||||| |||||||||||| || | ||||| ||  ||| | ||||||||| |||||||||||    
T  42000172 agcatacccaatgaatatacattcatagactctactagtgagttcaactctcttggggtccagaatctaaatatattttagacaatccgaagttcaaaaa 42000271  T
Q  358 ataagacaagttgaattat 376  Q
    ||||||||||||| |||||    
T  42000272 ataagacaagttggattat 42000290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 77 - 315
Target Start/End: Original strand, 36426912 - 36427166
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-----------------ctagtgcccccactatatctt 159  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||                 |||||||||||||||| ||||    
T  36426912 gtgatcaaatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccaataatgttgtgctcccactagtgcccccactat-tctt 36427010  T
Q  160 taatttacggaggtactta-atttc-atagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttattta 257  Q
    || || | || ||||  || ||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| | ||||    
T  36427011 tagttaaagg-ggtaaatatatttccatagaaatcgacatcttttaattctatgatcactttagcatttaagtcataaa-cttatatgcttcgctgttta 36427108  T
Q  258 taacatatccaatgaatacacattcataggctttactagtgagtttaactctcttggg 315  Q
    || |||| | |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36427109 tagcatacctaatgaatacacattcataggctctactagtgagttcaactctcttggg 36427166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 13585167 - 13585035
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||||||||| | ||| ||| ||||||||||||||||| | || |||||||||||| |||||||||   | ||||   |||| ||||||||||||||    
T  13585167 tttcatagaaatcagaatcatttgattctatgatcactttagctttaaggtcataaaacctatatgctttactgtttaaggcatacccaatgaatacaca 13585068  T
Q  280 ttcataggctttactagtgagtttaactctctt 312  Q
    |||||||||| |||| |  ||||| ||||||||    
T  13585067 ttcataggctctacttgctagttttactctctt 13585035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 39521698 - 39521748
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaattta 127  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  39521698 gtgatcagatatagtgcccccactagttcttaatttttagaaggaaattta 39521748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 23978790 - 23978696
Alignment:
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtc-agacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| ||||||||||||||||||||||||  || |||  | || |   ||| |||||||| |||||||||||||||||||||||||    
T  23978790 acattcataggctctactagtgagtttaactctcttggagtccaaaattcaaatatagtcaagacaatctcaagttcaaaaaataagacaagttg 23978696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 315
Target Start/End: Original strand, 17507719 - 17507854
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    |||||||||| || ||||| ||| |||||||||||  ||||   || ||||| |||||| |||| ||||   ||||||   |||| ||||||||||||||    
T  17507719 tttcatagaagtcagcatcatttgattctatgatcgttttagatttcaggtcgtaaaacctataagctttactatttaaggcatacccaatgaatacaca 17507818  T
Q  280 ttcataggctttactagtgagtttaactctcttggg 315  Q
    |||||||||| |||| |  ||||| ||||| |||||    
T  17507819 ttcataggctctacttgctagtttgactcttttggg 17507854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 24773807 - 24773672
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    |||||||||| || ||||| ||| |||||||||||  ||||   || ||||| |||||| |||| ||||   ||||||   |||| ||||||||||||||    
T  24773807 tttcatagaagtcagcatcatttgattctatgatcgttttagatttcaggtcgtaaaacctataggctttactatttaaggcatacccaatgaatacaca 24773708  T
Q  280 ttcataggctttactagtgagtttaactctcttggg 315  Q
    |||||||||| |||| |  ||||| ||||| |||||    
T  24773707 ttcataggctctacttgctagtttgactcttttggg 24773672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 119 - 370
Target Start/End: Original strand, 81653 - 81896
Alignment:
Q  119 gggaatttagtttgccaccactagtgcccccactatatctttaatttac-ggaggtacttaatttcatagaaatcggcatcttttaattctatgatcact 217  Q
    ||||||||||||| || |||||    |||||||||| |||||||||||| || |||||||| || |||||||||| ||||||||||||||||||||||||    
T  81653 gggaatttagtttacccccact----cccccactat-tctttaatttacagggggtacttactt-catagaaatcagcatcttttaattctatgatcact 81746  T
Q  218 ttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggtt 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  81747 ttaacatttaggtcataaaacctatatgcttcgttatttataacatatctaatgaatacacattcataggctctactagtgagtttatctctcttgggtt 81846  T
Q  318 cgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||  |||||||||||   |||||||||||||||||||||||||||||||    
T  81847 cgaaattcgaacttatgtc---caatcccaagttcaaaaaataagacaagttg 81896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 8320156 - 8319869
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||||||||||||||||| |||||||||     || ||||||||||||| || ||||||||||||||||||| |||||||||||| | ||||||    
T  8320156 gtgatcagatatagtgcccccactggttcttaatac---aaggggaatttagtttacccccactagtgcccccactat-tctttaatttacaggggtact 8320061  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
     |  ||||||||||||  |||  ||||| | ||||||||||||| |||||| |||||||||| |||| |||||  || ||||| |||||||||||||| |    
T  8320060 -agcttcatagaaatcaacataatttaactttatgatcactttagcatttaagtcataaaacctataagcttccctaattatagcatatccaatgaatgc 8319962  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  8319961 acattcataggctctactagtgagtttaactctcttggcttcgaaatccgaacttatgtcagacaatcccaagttca-aaaataagacaagttg 8319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 4239856 - 4239558
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 171  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||     ||||||||||||| |||||| |||   | |    
T  4239856 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgcccccactat-tctttagtttcaaggg 4239758  T
Q  172 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg 271  Q
    |||  || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| || | |||||||| |||| ||||||    
T  4239757 gtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaagcctatatgttttgctatttatagcatacccaatg 4239658  T
Q  272 aatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  4239657 aatatacattcataggctgtactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 4239558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 25369262 - 25368973
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||||||||||||||||||||||||||| |  ||  ||||||||| ||| || |||||||||||| |||||| |||||||||||| | |||||     
T  25369262 gtgatcagatatagtgcccccactagttcttaatatacaag-gggaatttaatttacccccactagtgccctcactat-tctttaatttacaggggtacc 25369165  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
     |  ||||||||||||  |||| ||| | | ||||||||||||| ||||||||||||||||| |||| ||||   || |||||  ||| ||||||||| |    
T  25369164 -agcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcctaattatattatacccaatgaatgc 25369066  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||  ||||| ||||||  |||||||||||||| ||||||||||||||||    
T  25369065 acattcataggctctactagtgagtttaactttcttgggttcgaaattcgaactcatgtcaagcaatcccaagttca-aaaataagacaagttg 25368973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 40127421 - 40127111
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----------------gtgcccccactatatctt 159  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||                 ||||||||||||| ||||    
T  40127421 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccactaatgtcgtgctcccgctagtgcccccactat-tctt 40127323  T
Q  160 taatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttata 259  Q
    || ||||  | ||||  || || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || | ||||||||    
T  40127322 tagtttaaaggggtaaatatttacattgaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgttttgctatttata 40127223  T
Q  260 acatatccaatgaatacacattcataggctttactagtgagtttaactctctt-gggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaa 358  Q
     |||| |||||||||| ||||||||||||| |||||||||||| ||||||||| |||| | |||||| ||  ||   |||||||| ||||||| ||||||    
T  40127222 gcatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccaaaatctaaatatagtccagacaattccaagtttaaaaaa 40127123  T
Q  359 taagacaagttg 370  Q
    ||||||||||||    
T  40127122 taagacaagttg 40127111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 77 - 369
Target Start/End: Complemental strand, 23083411 - 23083114
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccactatatctttaatttacggag 171  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||| || |   ||     ||||||||||||| ||| || ||||  | |    
T  23083411 gtgatcagatatagttcccccactatttcttaatttttagaagggaatttatttttccgcagataatgttgtgcccccactat-tctgtagtttaaaggg 23083313  T
Q  172 gtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatg 271  Q
    |||  ||  | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| |||| ||||||    
T  23083312 gtaaatatctacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtaataaaacctatatgtttcgctatttatagcatacccaatg 23083213  T
Q  272 aatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagtt 369  Q
    |||| ||||||||||||| |||| ||||||| |||||||||||| || | ||||| ||  ||   ||||||||||||||||||||||||||||||||||    
T  23083212 aatatacattcataggctctactggtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagtt 23083114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 38184029 - 38183897
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 282  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||  |||  |||||||| |||| |||||||||||||||||    
T  38184029 catagaaatcgacatcttttaattctatgatcactttagcatttaggtcataaaacctatatatttccctatttatagcatacccaatgaatacacattc 38183930  T
Q  283 ataggctttactagtgagtttaactctcttggg 315  Q
    ||||||| ||  |||||||| ||||||||||||    
T  38183929 ataggctctatcagtgagttcaactctcttggg 38183897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 17023623 - 17023744
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| | |||||  |||| | ||||||||||||    
T  17023623 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcgctgtttattgcatacctaatgaatacaca 17023721  T
Q  280 ttcataggctttactagtgagtt 302  Q
    |||||||||| ||||||||||||    
T  17023722 ttcataggctctactagtgagtt 17023744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 302
Target Start/End: Original strand, 17554116 - 17554237
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| | |||||  |||| | ||||||||||||    
T  17554116 tttcatagaaatcagcatcttttaattttatgatcactttaacatttaggtcat-aaacctatatgcttcgctgtttattgcatacctaatgaatacaca 17554214  T
Q  280 ttcataggctttactagtgagtt 302  Q
    |||||||||| ||||||||||||    
T  17554215 ttcataggctctactagtgagtt 17554237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 313
Target Start/End: Original strand, 34117025 - 34117155
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 282  Q
    ||||||||||  |||| ||| ||||||||||||||||| ||||||||||||||||| |||||| ||   ||||||||||||| |||||||||||||||||    
T  34117025 catagaaatcaacatcattttattctatgatcactttagcatttaggtcataaaacctatatgattttctatttataacatacccaatgaatacacattc 34117124  T
Q  283 ataggctttactagtgagtttaactctcttg 313  Q
    ||||||| |||||||||||| |||| |||||    
T  34117125 ataggctctactagtgagttcaactttcttg 34117155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 4539975 - 4539858
Alignment:
Q  131 tgccaccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggt 230  Q
    |||| |||| |||||||||||||| |  ||||||||  | || | |||||||||||||||||  |||| ||| ||||||||||||| | |||||||||||    
T  4539975 tgcccccaccagtgcccccactattttcttaatttaaaggggaatttaatttcatagaaatcatcatcgtttgattctatgatcacatcaacatttaggt 4539876  T
Q  231 cataaaacttatatgctt 248  Q
    | |||||| |||||||||    
T  4539875 cgtaaaacctatatgctt 4539858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 367
Target Start/End: Original strand, 19952762 - 19952954
Alignment:
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 275  Q
    ||||||||| |||||||  |||| ||| ||||||||||||| |||||||||| |||||||||| ||||   ||     || ||  |||| | ||| |||     
T  19952762 ttaatttcaaagaaatcatcatcgtttgattctatgatcacattaacatttaagtcataaaacctatacattttccggttaatttcatacctaataaatt 19952861  T
Q  276 cacattcataggctttactagtgagtttaactctcttggg-ttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaag 367  Q
    |||||||||||||| || |||||||||| ||||||||||| || | |||| |||  || | || |||||||||||| ||||||||||||||||    
T  19952862 cacattcataggctctattagtgagttttactctcttgggatttggaatccgaagataggccaaacaatcccaagtccaaaaaataagacaag 19952954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 17023505 - 17023560
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttg 132  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  17023505 gtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttg 17023560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 17553998 - 17554053
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttg 132  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  17553998 gtgatcagatatagtgcccccactagttcataatttttaatagggaatttattttg 17554053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 38184120 - 38184073
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatt 125  Q
    |||||||||||||||||||| |||||||| ||| |||||||||| ||||    
T  38184120 gtgatcagatatagtgcccctactagttcgtaa-ttttaaaaggaaatt 38184073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 25853676 - 25853971
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagttt--gccaccactagtgcccccactatatctttaatttacggaggta 174  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  ||  ||||||||||||||||||| |||||| ||||  | ||||    
T  25853676 gtgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttttgctcccactagtgcccccactat-tctttagtttaaaggggta 25853774  T
Q  175 cttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaat 274  Q
       | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| ||||  ||||||||    
T  25853775 aagatttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatactcaatgaat 25853874  T
Q  275 acacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    | ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||||||||||    
T  25853875 atacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagttcaaaaaataagacaagttg 25853971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 370
Target Start/End: Original strand, 10138571 - 10138884
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacc-----------------actagtgcccccactatatcttt 160  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||                 ||||||||||||||||| |||||    
T  10138571 tgatcagatatagtgcccccactagttcttaatttttagaagggaatttattttgcccccggtaatgttttgctcccactagtgcccccactat-tcttt 10138669  T
Q  161 aatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataa 260  Q
    | ||||  | ||||  || || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||     
T  10138670 agtttaaaggggtaaatatttacatagaaatcggcgtcttttaattctatgatcactttaacatttaggtcataaaact-atatgtttcgctatttatag 10138768  T
Q  261 catatc-----caatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaa 354  Q
    |||| |     ||||||||| ||||||||||||| |||||||||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||| ||    
T  10138769 cataccatacccaatgaatatacattcataggctctactagtgagttcaactctcttggggtccagaatctaaatatagtccagacaatcccaagtttaa 10138868  T
Q  355 aaaataagacaagttg 370  Q
    ||||||||||||||||    
T  10138869 aaaataagacaagttg 10138884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 374
Target Start/End: Complemental strand, 16750129 - 16749979
Alignment:
Q  224 tttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggttcga-aa 322  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||| || | ||    
T  16750129 tttaggtcataaaacctatatgcttcgctatttataacatacccaatgaatacatattcataggctctactagtgagttcaactctcttggggtccagaa 16750030  T
Q  323 tctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttgaatt 374  Q
    ||  ||  ||   ||||||||||||||||| || ||||||||||||||||||    
T  16750029 tccaaatatagtccagacaatcccaagttc-aataataagacaagttgaatt 16749979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 318
Target Start/End: Complemental strand, 47453563 - 47453452
Alignment:
Q  207 ctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaac 306  Q
    |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||| ||||||||||||||||||| | || |||||||||||| |||    
T  47453563 ctatgatcactttaacatttaggtcataaaacctatatgattttttatttataacatacccaatgaatacacattcattgactctactagtgagttcaac 47453464  T
Q  307 tctcttgggttc 318  Q
    |||| |||||||    
T  47453463 tctcctgggttc 47453452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 315
Target Start/End: Original strand, 18809820 - 18809953
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||| ||| || |||| ||| |||||| ||| |||||| |||||||||||||||||  ||||| || | |||||||| |||| || |||||||||||    
T  18809820 tttcatacaaaccgacatcatttgattctaagattactttagcatttaggtcataaaac--atatgttttgctatttatagcatacccgatgaatacaca 18809917  T
Q  280 ttcataggctttactagtgagtttaactctcttggg 315  Q
    |||||||| |||||||| |||  ||||| |||||||    
T  18809918 ttcataggatttactagcgagagtaactttcttggg 18809953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 315
Target Start/End: Original strand, 5727762 - 5727897
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    |||||||||| || ||||| ||| |||||||||||  ||||   || ||||| |||||| |||| ||||   ||||||   |||| ||||||||||||||    
T  5727762 tttcatagaagtcagcatcatttgattctatgatcgatttagatttcaggtcgtaaaacctataggctttactatttaaggcatacccaatgaatacaca 5727861  T
Q  280 ttcataggctttactagtgagtttaactctcttggg 315  Q
    |||||||||| |||| |  ||||| ||||| |||||    
T  5727862 ttcataggctctacttgctagtttgactcttttggg 5727897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 9e-74; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 78 - 370
Target Start/End: Original strand, 31272042 - 31272336
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 177  Q
    |||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||  ||||||||||||||||||| |||||| ||||  | ||||  |    
T  31272042 tgatcagatatagtgcccccactagttcttgatttttagaaggaaatttattttgctcccactagtgcccccactat-tctttagtttaaaggggtaaat 31272140  T
Q  178 aatttcatagaaatcggcatctttta--attctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 275  Q
    | || |||||||||| || |||||||  ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||| ||||||||||    
T  31272141 atttacatagaaatcagcgtcttttataattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaata 31272240  T
Q  276 cacattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
     ||||||||||||| ||||||||||||||||||||||||| || | ||||| ||  ||   |||||||||||||||||||||||||||| ||||||    
T  31272241 tacattcataggctctactagtgagtttaactctcttggggtccagaatctaaatatagtacagacaatcccaagttcaaaaaataagataagttg 31272336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 366
Target Start/End: Complemental strand, 37261389 - 37261101
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtactt 177  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||  |||||||||||||| |||| |||||| ||||  | ||||  |    
T  37261389 tgatcagatatagtgcccccactagttcttaatttttagaagagaatttattttgctcccactagtgcccccgctat-tctttagtttaaaggggtaaat 37261291  T
Q  178 aatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaataca 277  Q
    | || ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||| |||||||||| |    
T  37261290 atttacatagaaattggcgtcttttaattctatgatcactttaacatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatata 37261191  T
Q  278 cattcataggctttactagtgagtttaactctcttgggttcga-aatctgaacttatgtcagacaatcccaagttcaaaaaataagacaa 366  Q
    |||||||| ||| |||||| ||||| |||||||||||| || | ||||| ||  ||   |||||||||||||||| ||||||||||||||    
T  37261190 cattcatatgctctactagagagttcaactctcttggggtccataatctaaatatagtccagacaatcccaagtttaaaaaataagacaa 37261101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 71 - 370
Target Start/End: Original strand, 19105280 - 19105593
Alignment:
Q  71 gatatagtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta-----gtgcccccacta---------tat 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||     |||| |||||||         |||    
T  19105280 gatatagtgatcagatatagtgcccccactagttcttaatttttaaaaaggaatttattttacccccactaatttcgtgctcccactagtgccccactat 19105379  T
Q  157 -ctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatt 255  Q
     ||||| || | |||  ||  || || ||||||||||  |||||||||  ||||||||||||||| ||||||||||||||||| |||||| || ||||||    
T  19105380 tctttagttaaaggat-taaatatttacatagaaatcaacatcttttatatctatgatcactttagcatttaggtcataaaacctatatgttttgttatt 19105478  T
Q  256 tataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttgggtt--cgaaatctgaacttatgtcagacaatcccaagttca 353  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||| |||| ||||||| |  |||| ||  ||  ||  ||||||||||||||||||     
T  19105479 tatagcatatccaatgaatacacattcatagaatttactagtgagttcaactttcttggggtcccgaattc-aaatatagttcagacaatcccaagttc- 19105576  T
Q  354 aaaaataagacaagttg 370  Q
    |||||||||||||||||    
T  19105577 aaaaataagacaagttg 19105593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 32222590 - 32222458
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 282  Q
    |||| |||||| |||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||  ||||||||||| ||||    
T  32222590 catataaatcgacatcgttttattctatgatcactttagcatttaggtcataaaacctatatgcttcgctatttataacatactcaatgaatacatattc 32222491  T
Q  283 ataggctttactagtgagtttaactctcttggg 315  Q
    ||||||| |||||||||||| |||| |||||||    
T  32222490 ataggctctactagtgagttcaactttcttggg 32222458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 33465747 - 33465615
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 282  Q
    |||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||| |||| |||||||| |||| |||||||||||| ||||    
T  33465747 catagatatcgatatcttttaattctatgatcactttagcatttaggtcataaaacctatatgtttcgctatttatagcatacccaatgaatacatattc 33465648  T
Q  283 ataggctttactagtgagtttaactctcttggg 315  Q
    ||||||| |||||||||||| |||||| |||||    
T  33465647 ataggctctactagtgagttcaactcttttggg 33465615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 199 - 315
Target Start/End: Original strand, 39319071 - 39319187
Alignment:
Q  199 ttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtg 298  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||||||||| || |||||||||| ||||| |||||| ||||||||||| ||||||||    
T  39319071 ttttaattctatgatcactttagcattgaggtcataaaactgatatgcttcgctaattataacatacccaattaatacatattcataggctctactagtg 39319170  T
Q  299 agtttaactctcttggg 315  Q
    |||||||||||||||||    
T  39319171 agtttaactctcttggg 39319187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 208 - 347
Target Start/End: Original strand, 41815422 - 41815556
Alignment:
Q  208 tatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaact 307  Q
    ||||||||||||| ||||||||||||||||| |||| |||||  || ||||| |     |||||||| |||||||||||||| |||||||||||||||||    
T  41815422 tatgatcactttagcatttaggtcataaaacctataagcttccctaattatacc-----caatgaattcacattcataggctctactagtgagtttaact 41815516  T
Q  308 ctcttgggttcgaaatctgaacttatgtcagacaatccca 347  Q
    |||||||| |||||||  |||||||||||| |||||||||    
T  41815517 ctcttgggatcgaaattcgaacttatgtcaaacaatccca 41815556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 121 - 307
Target Start/End: Original strand, 16951137 - 16951322
Alignment:
Q  121 gaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcacttta 220  Q
    ||||||| |||||| |||||||||||| |||||| ||||||||||||   |||| ||  ||||| | | ||| | ||  ||| |||||| ||| ||||||    
T  16951137 gaatttattttgcccccactagtgccctcactat-tctttaatttacaagggtatttcttttcacatatatcagtataattttattctaagattacttta 16951235  T
Q  221 acatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaact 307  Q
     ||||| ||||||||||| || |||||  |||||||||  |||||||||||||| |||||| ||||||| | |||||||||||||||    
T  16951236 gcatttcggtcataaaacctagatgctatgttatttatggcatatccaatgaatgcacatttataggctctgctagtgagtttaact 16951322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 33465880 - 33465816
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 141  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||| ||| || ||||||    
T  33465880 gtgatcagatatagtgcccccactatttcataatttttaaaaaggaatttatttttcccccacta 33465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 39318923 - 39318980
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaa-tttttaaaagggaatttagtttgc 133  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| |||||    
T  39318923 gtgatcagatatagttcccccacttgttcttaattttttaaaagggattttattttgc 39318980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 15134794 - 15134740
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaa 237  Q
    ||||||||||| |||| ||||| |||||| |||||||  ||||||||||||||||    
T  15134794 catagaaatcgacatcgtttaagtctatgctcacttttgcatttaggtcataaaa 15134740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 78 - 370
Target Start/End: Complemental strand, 712 - 422
Alignment:
Q  78 tgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact- 176  Q
    |||||||||||||||||||||||||||| |||| |  ||  ||||||||||||| || |||||||||| |||||||| |||||||||||| | |||||      
T  712 tgatcagatatagtgcccccactagttcataatatacaag-gggaatttagtttacccccactagtgctcccactat-tctttaatttacaggggtacaa 615  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
    | | |||||| ||||| ||||| ||| | | ||||||||| ||| ||||||||||||||||| |||| |||||  || ||||| |||| |||||||||||    
T  614 ttacttcataaaaatcagcatcatttgactttatgatcacgttagcatttaggtcataaaacatataagcttccctaattatagcatacccaatgaatac 515  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  514 acattcatagactctactagtgagtttaacgctcttgggttcgaaatctgaacttatgtc-gacaataccaagttcaaaaaataagacaagttg 422  T

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Target: scaffold0060 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 49554 - 49261
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccacca-ctagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| | |||||||||||||||||| |  ||  ||||||||||||| || ||| |||||||||||||||| |||||||||||| | ||||     
T  49554 gtgatcagatatactacccccactagttcttaatatacaag-gggaatttagtttacccccaactagtgcccccactat-tctttaatttacaggggtag 49457  T
Q  176 t--taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaa 273  Q
    |  ||  ||||||||||||  |||| ||| | | |||| ||| |||| ||||||||||||||||| |||| |||||  || ||||| |||| ||||||||    
T  49456 tactagcttcatagaaatcaacatcgtttgactttatggtcaatttagcatttaggtcataaaacctataagcttccctaattatagcatacccaatgaa 49357  T
Q  274 tacacattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  49356 tgtacattcataggctttactagtgagtttaactctcttgggttcgaaatccgaacttatgtcagacaatcccaagttca-aaaataagacaagttg 49261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 77 - 370
Target Start/End: Original strand, 61861 - 62150
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtact 176  Q
    |||||||||||||||||||||||||||||||||| |  ||  ||||||||| ||| || |||||||||||| |||||| |||||||||||| | |||||     
T  61861 gtgatcagatatagtgcccccactagttcttaatatacaag-gggaatttaatttacccccactagtgccctcactat-tctttaatttacaggggtacc 61958  T
Q  177 taatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatac 276  Q
     |  ||||||||||||  |||| ||| | | ||||||||||||| ||||||||||||||||| |||| ||||   || |||||  ||| ||||||||| |    
T  61959 -agcttcatagaaatcaacatcgtttgactttatgatcactttagcatttaggtcataaaacctataagctttcctaattatattatacccaatgaatgc 62057  T
Q  277 acattcataggctttactagtgagtttaactctcttgggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttg 370  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||  ||||| ||||||  ||||||||||||| |||||||||||||||||    
T  62058 acattcataggctctactagtgagtttaactttcttgggttcgaaattcgaactcatgtcaagcaatcccaagttc-aaaaataagacaagttg 62150  T

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Target: scaffold0070; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 66063 - 66096
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaat 110  Q
    ||||||||||||||||||||||||||||||||||    
T  66063 gtgatcagatatagtgcccccactagttcttaat 66096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 183 - 371
Target Start/End: Original strand, 21667959 - 21668148
Alignment:
Q  183 catagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattc 282  Q
    ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||  |||||| |||  |||||||||||||  ||||||||||||||||    
T  21667959 catagaaatcgacatcttttaattatatgatcactttagcatttaggtcataaaatctatatgattcactatttataacatactcaatgaatacacattc 21668058  T
Q  283 ataggctttactagtgagtttaactctcttg-ggttcgaaatctgaacttatgtcagacaatcccaagttcaaaaaataagacaagttga 371  Q
    ||||||| |||||||||||| |||||||||| ||||| |||||  ||  ||    ||||||||| |||| |||||||||||||| |||||    
T  21668059 ataggctctactagtgagttcaactctcttgaggttcaaaatccaaatataacctagacaatcctaagtacaaaaaataagacatgttga 21668148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 24147892 - 24147789
Alignment:
Q  212 atcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctct 311  Q
    ||||||||| ||| |  |||||||||| || |||||| |||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||||| |    
T  24147892 atcactttagcatatcagtcataaaacctagatgctttgttatttatgtcatatccaatgaatatacattcatagactttactagtgagtttaactcttt 24147793  T
Q  312 tggg 315  Q
    ||||    
T  24147792 tggg 24147789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 315
Target Start/End: Complemental strand, 10389739 - 10389632
Alignment:
Q  208 tatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaact 307  Q
    ||||||| ||||| ||||||||| ||||||  |||||| |||  |||||||| |||| ||| |||||||||||||||||||| ||| |||||||| ||||    
T  10389739 tatgatccctttagcatttaggtgataaaatctatatgtttcactatttatagcatacccattgaatacacattcataggctctaccagtgagttcaact 10389640  T
Q  308 ctcttggg 315  Q
    ||||||||    
T  10389639 ctcttggg 10389632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 15984856 - 15984971
Alignment:
Q  195 catcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggctttact 294  Q
    |||| ||| ||| ||||| ||||||| ||||||| ||||||||||||||||||| | |||||||  |||| |||||||||||| ||||||| ||| || |    
T  15984856 catcgtttgattttatgaccactttagcatttagttcataaaacttatatgctttgctatttatgtcatacccaatgaatacaaattcataagctctatt 15984955  T
Q  295 agtgagtttaactctc 310  Q
    |  |||||||||||||    
T  15984956 aacgagtttaactctc 15984971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 313
Target Start/End: Complemental strand, 1289789 - 1289622
Alignment:
Q  143 tgcccccactatatctttaatttacggaggtacttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttat 242  Q
    |||||||||||| |||| |||||| | ||| | | |||||||||||||||  |||| ||| |||||||||| |||||| || ||| |||| ||||| ||     
T  1289789 tgcccccactatttctt-aatttaagcaggaattaaatttcatagaaatcaacatcatttgattctatgattactttagca-ttatgtca-aaaacctac 1289693  T
Q  243 atgcttcgttatttataacatatccaatgaatacacattcataggctttactagtgagtttaactctcttg 313  Q
    |||||| ||||||  ||||||| ||| ||||| |||||||||| ||| || |||||||||| |||||||||    
T  1289692 atgctttgttattactaacatacccagtgaatgcacattcataagctctaatagtgagttttactctcttg 1289622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 21667830 - 21667878
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagggaatt 125  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  21667830 gtgatcagatattgtgcccccactaattcttaatttttaaaagggaatt 21667878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 10389892 - 10389827
Alignment:
Q  76 agtgatcagatatagtgcccccactagttcttaatttttaaaagggaatttagtttgccaccacta 141  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |||||| ||| || ||||||    
T  10389892 agtgattagatatagtgccccaactagttcttaatttttaaaagacaatttatttttcccccacta 10389827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 315
Target Start/End: Complemental strand, 15998146 - 15997909
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaattttt-aaaagggaatttagtttgccaccactagtgcccccactatatctttaatttacggaggtac 175  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||||||||||||| | | || ||||||||||||||||||| ||||||| |||| | |||||    
T  15998146 gtgatcagatataatgccctcactagctcttaattttttaaaagggaatttattgttcc-ccactagtgcccccactat-tctttaagttacaggggtac 15998049  T
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaata 275  Q
    |||  ||| ||||  || |||||  ||  |||||||||||||||| ||||||||||||||||| ||||||||||   ||||| | ||||   ||||||||    
T  15998048 ttatcttcgtagacgtcagcatcgattgtttctatgatcactttagcatttaggtcataaaacctatatgcttcacaatttaaagcatacttaatgaata 15997949  T
Q  276 cacattcataggctttactagtgagtttaactctcttggg 315  Q
    |||||||||||||| | |||| ||||| || |||||||||    
T  15997948 cacattcataggctctgctagcgagttcaagtctcttggg 15997909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 16836367 - 16836324
Alignment:
Q  77 gtgatcagatatagtgcccccactagttcttaatttttaaaagg 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  16836367 gtgatcagatatagtgcccccactagttcttaatttttagaagg 16836324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 17285295 - 17285166
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||||||||  || || ||| |||||||||||| |||| | || |||||||||||  |||||||||   | ||||   |||| ||||||||||||||    
T  17285295 tttcatagaaattagcgtcatttcattctatgatcattttagctttaaggtcataaaagctatatgctttactgtttaaggcatacccaatgaatacaca 17285196  T
Q  280 ttcataggctttactagtgagtttaactct 309  Q
    |||||||||| |||| || ||||| |||||    
T  17285195 ttcataggctctacttgttagtttgactct 17285166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 286
Target Start/End: Original strand, 10490784 - 10490890
Alignment:
Q  180 tttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacaca 279  Q
    ||||||||||||| |  || ||| ||||||||||||||||| | |  |||||||||||| |||||||||   | ||||   |||| ||||||||||||||    
T  10490784 tttcatagaaatcagtttcatttgattctatgatcactttagcttcaaggtcataaaacctatatgctttactctttaaggcatacccaatgaatacaca 10490883  T
Q  280 ttcatag 286  Q
    |||||||    
T  10490884 ttcatag 10490890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 14776891 - 14776963
Alignment:
Q  176 ttaatttcatagaaatcggcatcttttaattctatgatcactttaacatttaggtcataaaacttatatgctt 248  Q
    ||||||||||| |||||   ||||||| ||| |||||||||  || ||||||| ||||||||| |||||||||    
T  14776891 ttaatttcataaaaatcattatcttttgattatatgatcacagtagcatttagatcataaaacctatatgctt 14776963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 31099 - 31016
Alignment:
Q  206 tctatgatcactttaacatttaggtcataaaacttatatgcttcgttatttataacatatccaatgaatacacattcataggct 289  Q
    ||||||||||||||| | |||| |||||||||| |||||||||   ||||||   |||| ||||||||||||||||||||||||    
T  31099 tctatgatcactttagcttttatgtcataaaacctatatgctttactatttaaggcatacccaatgaatacacattcataggct 31016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 435
Target Start/End: Complemental strand, 16725 - 16690
Alignment:
Q  400 ttataaaagaaaccgatacataaaaaacagatatag 435  Q
    ||||||||||||||||||||||||||||| ||||||    
T  16725 ttataaaagaaaccgatacataaaaaacaaatatag 16690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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