View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_low_10 (Length: 439)
Name: NF17862_low_10
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 30563935 - 30563547
Alignment:
| Q |
18 |
acaattttgtttactaaattgactgaccattagagaagctgaatcatcata-gtacattaatgacaataagttatgagctggaaggagataccgtgtgat |
116 |
Q |
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| T |
30563935 |
acaattttgtttaccaaattgactgaccattagagaagctgaatcatcataagtacattaatgacaataagttatgagctggaaggagataccgtgtgat |
30563836 |
T |
|
| Q |
117 |
ggatggaaattgagctgtaacagagagtttctcctcaatttcctttctcttcttactgtcatatactttcactttcattctctctataaatatatctcaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30563835 |
ggatggaaattgagctgtaacagagagtttctcctcaatttcccttctcttcttactgtcatgtactttcactttcattctctctataaatatatctcaa |
30563736 |
T |
|
| Q |
217 |
ct---------tgttttttgtctcacacttcatcttctttcacatagttacctattacaagccactcactttatgtgtacatgaaattcaacaccttgtt |
307 |
Q |
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|| ||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
30563735 |
cttgttcaacttgttttttgtctcactcataatcttctttcacatagttacctattacaagccattcactttatgtgtacatgaaatttaacaccttgtt |
30563636 |
T |
|
| Q |
308 |
ttgcatgtttgctactctactcttcactgttctgttctagtcacacttcagaatcaaatccttcattttaaacattactatacttgaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||| |||| |||| |
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| T |
30563635 |
ttgcatgtttgctactctactcttcactgttctgttctagtcacaccgcaaaatcaaatccttcattttaaacactactgtactagaaa |
30563547 |
T |
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