View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17862_low_11 (Length: 415)

Name: NF17862_low_11
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17862_low_11
NF17862_low_11
[»] chr5 (2 HSPs)
chr5 (14-398)||(9603066-9603445)
chr5 (355-398)||(9589103-9589146)
[»] chr8 (13 HSPs)
chr8 (314-400)||(6457979-6458065)
chr8 (19-125)||(6364468-6364574)
chr8 (31-219)||(6452071-6452259)
chr8 (21-116)||(6353604-6353699)
chr8 (21-116)||(6392100-6392195)
chr8 (314-400)||(6451889-6451975)
chr8 (31-217)||(6458166-6458352)
chr8 (21-115)||(7460677-7460771)
chr8 (21-116)||(6290512-6290607)
chr8 (14-127)||(6275749-6275862)
chr8 (49-116)||(6264935-6265002)
chr8 (31-116)||(6411264-6411349)
chr8 (14-130)||(6371294-6371410)
[»] chr2 (3 HSPs)
chr2 (31-116)||(42694396-42694481)
chr2 (347-393)||(42687709-42687755)
chr2 (145-195)||(42687290-42687340)
[»] chr3 (3 HSPs)
chr3 (87-127)||(35706521-35706561)
chr3 (93-127)||(35722349-35722383)
chr3 (91-127)||(35728277-35728313)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 398
Target Start/End: Original strand, 9603066 - 9603445
Alignment:
Q  14 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603066 attagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 9603165  T
Q  114 gatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603166 gatcttggtgatccagatgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaac 9603265  T
Q  214 caactaaaaagggtaaannnnnnnnnnnnnnnnnntttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttg 313  Q
    |||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603266 caactaaaaagggtaaa-----aaaaaatattaattttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttg 9603360  T
Q  314 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttcctta 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603361 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttcctta 9603445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 9589103 - 9589146
Alignment:
Q  355 aagagatgaaaattttggacacttgaagtcatctgacttcctta 398  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||    
T  9589103 aagagatgaaaattttggtcacttaaagtcatcagacttcctta 9589146  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 6458065 - 6457979
Alignment:
Q  314 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttatg 400  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  6458065 acagatcctaagagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatg 6457979  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 6364574 - 6364468
Alignment:
Q  19 tctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatct 118  Q
    ||||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||||||||||||||||||| |    
T  6364574 tctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgattt 6364475  T
Q  119 tggtgat 125  Q
     ||||||    
T  6364474 gggtgat 6364468  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 219
Target Start/End: Complemental strand, 6452259 - 6452071
Alignment:
Q  31 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttggtgatccaga 130  Q
    ||||||| ||||| ||||||||||||||||| || ||| |||| ||||||||||| ||  | || ||||||||||| || |||||||| ||  |||| ||    
T  6452259 aagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggataggatatacgattatgatgtttataatgatctcggaaatcctga 6452160  T
Q  131 tgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta 219  Q
    ||  |  | |   |||| ||||||  |||||||||| |||||||| ||||| |||||||| |||||||||| |||| ||||||||||||    
T  6452159 tggtggcgacgcccttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta 6452071  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 6353699 - 6353604
Alignment:
Q  21 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 116  Q
    ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||||||| | |||||||| |||||||||||||||    
T  6353699 tactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgat 6353604  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 6392195 - 6392100
Alignment:
Q  21 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 116  Q
    ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||||| ||| | ||||||||||||||||||||||||    
T  6392195 tactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgat 6392100  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 6451975 - 6451889
Alignment:
Q  314 acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttatg 400  Q
    ||||||| ||| ||||||| ||| ||||  || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  6451975 acagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatg 6451889  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 6458352 - 6458166
Alignment:
Q  31 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgatcttggtgatccaga 130  Q
    ||||||| ||||| | ||||||||||||||| |||||| | || ||||||  ||| |||||||||||||||||| | || |||||| | ||  |||||||    
T  6458352 aagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagagtttatgattatgatatttataatgatttgggaaatccaga 6458253  T
Q  131 tgaagatgtcaagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaac 217  Q
    ||  | || |   ||||  ||||| |||||||| || || |||||  |||| |||||||| ||||||||||||||| ||||||||||    
T  6458252 tggtggtgacgcacttgtccgtcctgtccttgggggatcaagcacctatccctaccctcgcagggttagaagtggtagaaaaccaac 6458166  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 7460771 - 7460677
Alignment:
Q  21 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatga 115  Q
    ||||||||||||||||||||| | | | ||||||||||||| || ||| | || || |||||||| ||| | |||||||||||||||||||||||    
T  7460771 tactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatgatgtctacaatga 7460677  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 6290607 - 6290512
Alignment:
Q  21 tactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 116  Q
    ||||| ||||||||||||||| | | | ||||||||||||| || ||| | || || |||||||||||| | |||||||| |||||||||||||||    
T  6290607 tactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgat 6290512  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 6275862 - 6275749
Alignment:
Q  14 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 113  Q
    |||| ||||||| ||||||||||| ||| | | | ||||||||||||| || ||| | || ||||||||||||||  | ||||| || ||||||||||||    
T  6275862 attagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacgatgtctacaat 6275763  T
Q  114 gatcttggtgatcc 127  Q
    ||| | ||||||||    
T  6275762 gatgtgggtgatcc 6275749  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 6265002 - 6264935
Alignment:
Q  49 taagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 116  Q
    ||||||||||||| || ||  | || ||||||||||| |||||||||||||||||||| |||||||||    
T  6265002 taagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatgatgtttacaatgat 6264935  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 6411349 - 6411264
Alignment:
Q  31 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 116  Q
    ||||||||||| | | | ||||||||||||| |||||| | || || | |||||| ||| | ||||||||||||||||||||||||    
T  6411349 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgat 6411264  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 6371410 - 6371294
Alignment:
Q  14 attattctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaat 113  Q
    |||| ||||||||||||||||||| ||| | | | ||||||||||||| || ||  | || ||||||||||| ||  | ||||| || ||||||||||||    
T  6371410 attagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacgatgtctacaat 6371311  T
Q  114 gatcttggtgatccaga 130  Q
    ||| | ||||| |||||    
T  6371310 gatttgggtgaaccaga 6371294  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 42694481 - 42694396
Alignment:
Q  31 aagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatgggaaagagtttatgattatgatgtctacaatgat 116  Q
    ||||||||||| | ||| ||||||||||||| || ||| |||| ||||||||||||||| | ||||||||||||||||||||||||    
T  42694481 aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgat 42694396  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 42687709 - 42687755
Alignment:
Q  347 tatgttccaagagatgaaaattttggacacttgaagtcatctgactt 393  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||    
T  42687709 tatgttccaagagatgaaaattttggtcacttgaagtcctcagactt 42687755  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 42687290 - 42687340
Alignment:
Q  145 ttgctcgtccggtccttggagggtctagcactcatccttaccctcgaaggg 195  Q
    ||||||| || || ||||||||||||||||| |||||||||||||| ||||    
T  42687290 ttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggg 42687340  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 35706521 - 35706561
Alignment:
Q  87 agagtttatgattatgatgtctacaatgatcttggtgatcc 127  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  35706521 agagtttatgactatgatgtctacaatgatcttggagatcc 35706561  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 35722349 - 35722383
Alignment:
Q  93 tatgattatgatgtctacaatgatcttggtgatcc 127  Q
    ||||||||||||||||||||||||||||| |||||    
T  35722349 tatgattatgatgtctacaatgatcttggagatcc 35722383  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 35728313 - 35728277
Alignment:
Q  91 tttatgattatgatgtctacaatgatcttggtgatcc 127  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  35728313 tttatgactatgatgtctacaatgatcttggagatcc 35728277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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