View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17862_low_15 (Length: 307)

Name: NF17862_low_15
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17862_low_15
NF17862_low_15
[»] chr7 (8 HSPs)
chr7 (11-307)||(1656376-1656672)
chr7 (263-307)||(9778452-9778496)
chr7 (265-307)||(11061147-11061189)
chr7 (258-307)||(13770630-13770679)
chr7 (265-307)||(21141053-21141095)
chr7 (263-307)||(1433398-1433442)
chr7 (262-302)||(17851374-17851414)
chr7 (263-307)||(25481846-25481890)
[»] scaffold0027 (1 HSPs)
scaffold0027 (263-307)||(46626-46670)
[»] chr6 (9 HSPs)
chr6 (263-307)||(8777044-8777088)
chr6 (262-307)||(18367780-18367825)
chr6 (263-307)||(426585-426629)
chr6 (263-307)||(7938060-7938104)
chr6 (263-307)||(9107441-9107485)
chr6 (263-306)||(10294051-10294094)
chr6 (264-298)||(7027197-7027231)
chr6 (263-307)||(5970173-5970217)
chr6 (263-307)||(9027122-9027166)
[»] chr5 (10 HSPs)
chr5 (263-307)||(15382421-15382465)
chr5 (263-303)||(34276801-34276841)
chr5 (263-307)||(6326368-6326412)
chr5 (263-307)||(20683325-20683369)
chr5 (263-307)||(21522694-21522738)
chr5 (263-307)||(21533260-21533304)
chr5 (263-307)||(23016062-23016106)
chr5 (264-304)||(28862262-28862302)
chr5 (268-307)||(13287470-13287509)
chr5 (262-307)||(6401441-6401486)
[»] chr3 (13 HSPs)
chr3 (263-307)||(750690-750734)
chr3 (263-307)||(14027959-14028003)
chr3 (259-307)||(15796365-15796413)
chr3 (263-307)||(3164096-3164140)
chr3 (263-307)||(10318111-10318155)
chr3 (263-307)||(10335357-10335401)
chr3 (263-306)||(7171446-7171489)
chr3 (262-303)||(14747510-14747551)
chr3 (263-303)||(21479068-21479108)
chr3 (263-307)||(24205112-24205156)
chr3 (263-307)||(35994808-35994852)
chr3 (262-302)||(38731161-38731201)
chr3 (263-303)||(39756186-39756226)
[»] chr2 (7 HSPs)
chr2 (263-307)||(30335361-30335405)
chr2 (263-303)||(26769461-26769501)
chr2 (265-307)||(23058514-23058556)
chr2 (262-299)||(21374773-21374810)
chr2 (263-304)||(41462137-41462178)
chr2 (263-307)||(18631470-18631514)
chr2 (263-303)||(40361829-40361869)
[»] chr1 (11 HSPs)
chr1 (263-307)||(10577806-10577850)
chr1 (263-307)||(398836-398880)
chr1 (263-307)||(18471242-18471286)
chr1 (266-306)||(26830542-26830582)
chr1 (264-306)||(1486781-1486823)
chr1 (264-306)||(16297355-16297397)
chr1 (263-304)||(25934572-25934613)
chr1 (263-300)||(38078734-38078771)
chr1 (263-307)||(6612242-6612286)
chr1 (263-303)||(41877545-41877585)
chr1 (263-307)||(48548033-48548077)
[»] scaffold0021 (1 HSPs)
scaffold0021 (262-307)||(130425-130470)
[»] scaffold0116 (1 HSPs)
scaffold0116 (263-307)||(9842-9886)
[»] scaffold0053 (1 HSPs)
scaffold0053 (263-307)||(8742-8786)
[»] chr8 (8 HSPs)
chr8 (263-307)||(24413631-24413675)
chr8 (263-307)||(43737884-43737928)
chr8 (264-307)||(926859-926902)
chr8 (263-306)||(20785531-20785574)
chr8 (263-307)||(3951600-3951644)
chr8 (263-307)||(22651920-22651964)
chr8 (263-307)||(29510375-29510419)
chr8 (264-304)||(34222893-34222933)
[»] chr4 (9 HSPs)
chr4 (263-307)||(23293057-23293101)
chr4 (263-307)||(42640476-42640520)
chr4 (263-303)||(4157102-4157142)
chr4 (263-307)||(20633429-20633473)
chr4 (263-307)||(21873434-21873478)
chr4 (263-307)||(21929295-21929339)
chr4 (263-307)||(24343451-24343495)
chr4 (263-303)||(37203222-37203262)
chr4 (263-307)||(44081648-44081692)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 1656376 - 1656672
Alignment:
Q  11 caaaggttgaagcaagcaaaagatgaagctgaaagggaggcagctcaatacagatctcaaatggaagaagaatatcaaaagtcactaacagaggtatata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1656376 caaaggttgaagcaagcaaaagatgaagctgaaagggaggcagctcaatacagatctcacatggaagaagaatatcaaaagtcactaacagaggtatata 1656475  T
Q  111 tgcacacacatttatacatggattttatttgcatgtttagtaaatgtttttatacatacattttgttgttacaaattctaaaatattttcataaatgtgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1656476 tgcacacacatttatacatggattttatttgcatgtttagtaaatgtttttatacatacattttgttgttacaaatcctaaaatattttcataaatgtgt 1656575  T
Q  211 atatatggtgagatttgattgaatgcatatggnnnnnnnnnttactatcacactatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||||||||||||||||         |||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||    
T  1656576 atatatggtgagatttgattgaatgcatatggaaaaaaaaattactatcactctatgaagtacggatatggacacggatatcggacacgacacggac 1656672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 9778452 - 9778496
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  9778452 ctatgaagcacggatacggacacggacaccggacacgacacggac 9778496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 11061189 - 11061147
Alignment:
Q  265 atgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||| |||||| |||||||||||    
T  11061189 atgaagcacggatacggacacggacatcggatacgacacggac 11061147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 13770630 - 13770679
Alignment:
Q  258 tcacactatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||| |||||||| |||| |||| ||||||||||||||||||    
T  13770630 tcacactatgaaacacggatatggactcggacatcggacacgacacggac 13770679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 21141095 - 21141053
Alignment:
Q  265 atgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||| | || |||||||||||||    
T  21141095 atgaagcacggatacggacacggacaccgtacacgacacggac 21141053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 1433398 - 1433442
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||| |||||| | || |||||||||||||    
T  1433398 ctatgaagcacggatacgggcacggacaccgaacacgacacggac 1433442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 17851374 - 17851414
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacgaca 302  Q
    |||||||||||||||||| |||||||| | |||||||||||    
T  17851374 actatgaagcacggatacagacacggacaccggacacgaca 17851414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 25481846 - 25481890
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||| |||||||| ||||||||| ||| ||||    
T  25481846 ctatgaagcacggatacagacacggacatcggacacaacatggac 25481890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 46626 - 46670
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  46626 ctatgaagcacggatacggacacggacatcggacacgacacggac 46670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 8777088 - 8777044
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  8777088 ctatgaagcacggatacggacacggacaacggacacgacacggac 8777044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 18367780 - 18367825
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||    
T  18367780 actatgaagcacggatacggacacggacaccggacacgacatggac 18367825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 426629 - 426585
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||    
T  426629 ctatgaagcatggatacagacacggataccggacacgacacggac 426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 7938060 - 7938104
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||    
T  7938060 ctatgaagcacggatacggacacggacaccggacacgacatggac 7938104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 9107485 - 9107441
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||    
T  9107485 ctatgaagcacggatactgacacggacaccggacacgacacggac 9107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 10294051 - 10294094
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacgga 306  Q
    |||||||||||||||||||||||| | | |||||||||||||||    
T  10294051 ctatgaagcacggatacggacacgaacaccggacacgacacgga 10294094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 7027197 - 7027231
Alignment:
Q  264 tatgaagcacggatacggacacggatatcggacac 298  Q
    ||||||||||||||||||||||||| |||||||||    
T  7027197 tatgaagcacggatacggacacggacatcggacac 7027231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 5970217 - 5970173
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| |||||||||||||| | |||||| |||||||||    
T  5970217 ctatgaagcacagatacggacacggacaccggacatgacacggac 5970173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 9027122 - 9027166
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| ||||||||||||||   ||||||||||||||||    
T  9027122 ctatgaagcaccgatacggacacggactccggacacgacacggac 9027166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 15382421 - 15382465
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  15382421 ctatgaagcacggatacggacacggacaccggacacgacacggac 15382465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 34276801 - 34276841
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  34276801 ctatgaagcacggatacggacacggataccggacacgacac 34276841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 6326412 - 6326368
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||    
T  6326412 ctatgaagcatggataaggacacggataccggacacgacacggac 6326368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 20683325 - 20683369
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||    
T  20683325 ctataaagcacggatacggacacggacaccggacacgacacggac 20683369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 21522694 - 21522738
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||  | ||||||||||||||||    
T  21522694 ctatgaagcacggatacggacacggtcaccggacacgacacggac 21522738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 21533260 - 21533304
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||  | ||||||||||||||||    
T  21533260 ctatgaagcacggatacggacacggtcaccggacacgacacggac 21533304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 23016106 - 23016062
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||||||||||   ||||||||||||||||    
T  23016106 ctatgaagcacggatacggacacggactccggacacgacacggac 23016062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 28862262 - 28862302
Alignment:
Q  264 tatgaagcacggatacggacacggatatcggacacgacacg 304  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  28862262 tatgaagcacggatatggacacggacatcggacacgacacg 28862302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 13287509 - 13287470
Alignment:
Q  268 aagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggac 13287470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 6401441 - 6401486
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||| |||||||| | ||||| ||||||||||    
T  6401441 actatgaagcacggatacagacacggacaccggacgcgacacggac 6401486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 750734 - 750690
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  750734 ctatgaagcacggatacggacacggacaccggacacgacacggac 750690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 14027959 - 14028003
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  14027959 ctatgaagcacggatacggacacggacaccggacacgacacggac 14028003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 15796413 - 15796365
Alignment:
Q  259 cacactatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  15796413 cacactatgaagcacggatatggacacggacaccggacacgacacggac 15796365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 3164140 - 3164096
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||    
T  3164140 ctatgaagcacggatacagacacggacaccggacacgacacggac 3164096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 10318155 - 10318111
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||| ||||||| | ||||||||||||||||    
T  10318155 ctatgaagcacggatacgaacacggacaccggacacgacacggac 10318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 10335401 - 10335357
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||| ||||||| | ||||||||||||||||    
T  10335401 ctatgaagcacggatacgaacacggacaccggacacgacacggac 10335357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 7171446 - 7171489
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacgga 306  Q
    ||||||||||||||||||||||| || | |||||||||||||||    
T  7171446 ctatgaagcacggatacggacacagacaccggacacgacacgga 7171489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 14747510 - 14747551
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacgacac 303  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  14747510 actatgaagcacggatacggatacggacaccggacacgacac 14747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 21479068 - 21479108
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||| ||||||||||||||| | ||||||||||||    
T  21479068 ctatgaagcatggatacggacacggacaccggacacgacac 21479108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 24205156 - 24205112
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||| || |||||||| | ||||||||||||||||    
T  24205156 ctatgaagcacggacacagacacggacaccggacacgacacggac 24205112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 35994852 - 35994808
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||| ||| | ||||||||||| ||||    
T  35994852 ctatgaagcacggatacggacatggacaccggacacgacatggac 35994808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 38731161 - 38731201
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacgaca 302  Q
    |||||||||||||||| |||||||||| | |||||||||||    
T  38731161 actatgaagcacggatgcggacacggacaacggacacgaca 38731201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 39756186 - 39756226
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||||||||| ||| ||||| ||||||||||||||    
T  39756186 ctatgaagcacggatatggatacggacatcggacacgacac 39756226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 30335361 - 30335405
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||||||||||| || ||||||||||||||    
T  30335361 ctatgaagcacggatacggacacggatctcagacacgacacggac 30335405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 26769461 - 26769501
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  26769461 ctatgaagcacggatacggacacggacaccggacacgacac 26769501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 23058556 - 23058514
Alignment:
Q  265 atgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||| ||||||||||||| | ||||||||||||||    
T  23058556 atgaagcacggacacggacacggatacctgacacgacacggac 23058514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 21374810 - 21374773
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacg 299  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  21374810 actatgaagcacggatacggacacggacaccggacacg 21374773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 41462178 - 41462137
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacg 304  Q
    |||||||||| ||||||||||||||| ||||||||| |||||    
T  41462178 ctatgaagcatggatacggacacggacatcggacacaacacg 41462137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 18631514 - 18631470
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| |||||| ||||||| | ||||||||||||||||    
T  18631514 ctatgaagcacagatacgaacacggacaccggacacgacacggac 18631470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 40361869 - 40361829
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||| ||||||||||||||||| || |||||||||    
T  40361869 ctatgaagcatggatacggacacggataccgaacacgacac 40361829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 10577850 - 10577806
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||||||||    
T  10577850 ctatgaagcacggatacggacacggacaccggacacgacacggac 10577806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 398880 - 398836
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||    
T  398880 ctatgaagcacggatacggacgcggacaccggacacgacacggac 398836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 18471242 - 18471286
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| |||| |||||||||||||||| |||||||||||    
T  18471242 ctatgaagcacagatatggacacggatatcggatacgacacggac 18471286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 26830542 - 26830582
Alignment:
Q  266 tgaagcacggatacggacacggatatcggacacgacacgga 306  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  26830542 tgaagcacggatatggacacggacatcggacacgacacgga 26830582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 1486823 - 1486781
Alignment:
Q  264 tatgaagcacggatacggacacggatatcggacacgacacgga 306  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||    
T  1486823 tatgaagcatggatacggacacggataccggatacgacacgga 1486781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 16297397 - 16297355
Alignment:
Q  264 tatgaagcacggatacggacacggatatcggacacgacacgga 306  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||    
T  16297397 tatgaagcacggatacggacatggacatcggacacgatacgga 16297355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 25934572 - 25934613
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacg 304  Q
    |||||||||||||||||||||||||| | |||||| ||||||    
T  25934572 ctatgaagcacggatacggacacggacaccggacatgacacg 25934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 38078771 - 38078734
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacga 300  Q
    |||||||||||||||||||||||||| | |||||||||    
T  38078771 ctatgaagcacggatacggacacggacaccggacacga 38078734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 6612286 - 6612242
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| |||||||||||| | | ||||||||||||||||    
T  6612286 ctatgaagcacagatacggacacgaacaccggacacgacacggac 6612242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 41877585 - 41877545
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||||||||||||||| ||||| | ||||||||||    
T  41877585 ctatgaagcacggatacggacatggataccagacacgacac 41877545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 48548077 - 48548033
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||| | ||||||    
T  48548077 ctatgaagcacggatacggacacggacaccggacacaatacggac 48548033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 130425 - 130470
Alignment:
Q  262 actatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||    
T  130425 actatgaagcatggatacggacacggacaccggacacgacacggac 130470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 9842 - 9886
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||    
T  9842 ctatgaagcacggatacggacacggacaccggacacgacatggac 9886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 8742 - 8786
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||| ||||||||||||||| | ||||||||||||||||    
T  8742 ctatgaagcatggatacggacacggacaccggacacgacacggac 8786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 24413675 - 24413631
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | | ||||||||||||||    
T  24413675 ctatgaagcacggatacggacacggacaccagacacgacacggac 24413631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 43737928 - 43737884
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||    
T  43737928 ctatgaagcacggatacagacacggacaccggacacgacacggac 43737884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 926902 - 926859
Alignment:
Q  264 tatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||    
T  926902 tatgaagcacggatacgaacacggacaccggacacgacacggac 926859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 20785574 - 20785531
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacgga 306  Q
    |||||||||||||||||||||||||| | || ||||||||||||    
T  20785574 ctatgaagcacggatacggacacggacaccgtacacgacacgga 20785531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 3951644 - 3951600
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | | || |||||||||||    
T  3951644 ctatgaagcacggatacggacacggacaccagatacgacacggac 3951600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 22651920 - 22651964
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||| |||||||||||||| || | ||||||||||||||||    
T  22651920 ctatgaagtacggatacggacactgacaccggacacgacacggac 22651964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 29510419 - 29510375
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||||||||| |||| ||| | ||||||||||||||||    
T  29510419 ctatgaagcacggatactgacatggacaccggacacgacacggac 29510375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 34222893 - 34222933
Alignment:
Q  264 tatgaagcacggatacggacacggatatcggacacgacacg 304  Q
    |||||| |||||||| ||||||||| |||||||||||||||    
T  34222893 tatgaaacacggatatggacacggaaatcggacacgacacg 34222933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 23293101 - 23293057
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||    
T  23293101 ctatgaagcacagatacggacacggacaccggacacgacacggac 23293057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 42640476 - 42640520
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| || |||||| ||||||||    
T  42640476 ctatgaagcacggatacggacacggacattggacacaacacggac 42640520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 4157102 - 4157142
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||||||||||||||||||| | | ||||||||||    
T  4157102 ctatgaagcacggatacggacacggacaccagacacgacac 4157142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 20633429 - 20633473
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||||||||||||||| | | ||||||| ||||||    
T  20633429 ctatgaagcacggatacggacacggacaccagacacgatacggac 20633473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 21873478 - 21873434
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||| |||||||||||| |||||||| || |||||||||||||||    
T  21873478 ctattaagcacggatacagacacggacattggacacgacacggac 21873434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 21929339 - 21929295
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||| |||||||||||| |||||||| || |||||||||||||||    
T  21929339 ctattaagcacggatacagacacggacattggacacgacacggac 21929295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 24343451 - 24343495
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    |||||||||||||| || |||||||| | ||||||||||||||||    
T  24343451 ctatgaagcacggacacagacacggacaccggacacgacacggac 24343495  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 37203222 - 37203262
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacac 303  Q
    |||||||||||||||| ||||||||| | ||||||||||||    
T  37203222 ctatgaagcacggatatggacacggacaccggacacgacac 37203262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 44081692 - 44081648
Alignment:
Q  263 ctatgaagcacggatacggacacggatatcggacacgacacggac 307  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||||    
T  44081692 ctatgaagcaccgatacggacacgaacatcggacacgacaaggac 44081648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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