View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17862_low_17 (Length: 260)
Name: NF17862_low_17
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 36969355 - 36969105
Alignment:
| Q |
1 |
taattaaccgtgaaaatccaatcaaatttcaggcatgcttcattctactaatttgaaatgatgtattaggacatcatctcccattaaattaagttgacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36969355 |
taattaaccgtgaaaatccaatcaaatttcaggcatgcttcattctactaatttgaaatgatgtattaggacatcatctcccattaaattaagttgacag |
36969256 |
T |
|
| Q |
101 |
caaagtcattaactctcagtttgaaacttatgtcagaattagggtttcagttagcatttcctctctatattggaaatttgggaccacttctcaactatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36969255 |
caaagtcattaactctcagtttgaaacttatgtcagaattagggtttcagttagcatttcctctctatattgggaatttgggaccacttctcaactatac |
36969156 |
T |
|
| Q |
201 |
tatcgatttaattatgccttatatatatactctcttatgttgtgtcctctctg |
253 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36969155 |
tatcgatttaattatgccttata--tatactctcttatgttgtgtcctctctg |
36969105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University