View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_low_19 (Length: 255)
Name: NF17862_low_19
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 50821740 - 50821515
Alignment:
| Q |
16 |
ctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttataga |
115 |
Q |
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| T |
50821740 |
ctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttataga |
50821641 |
T |
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| Q |
116 |
tgttgttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataa |
215 |
Q |
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| T |
50821640 |
tgttgttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataa |
50821541 |
T |
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| Q |
216 |
ttttctcattaaagctattaatttgt |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
50821540 |
ttttctcattaaagctattaatttgt |
50821515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 50854121 - 50854346
Alignment:
| Q |
16 |
ctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttataga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50854121 |
ctactgatattgctctagttgtctaggctttggatattgtgctagtttcctgttatttcactctctattttcctgttatcctttttgtggtagttataga |
50854220 |
T |
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| Q |
116 |
tgttgttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataa |
215 |
Q |
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| T |
50854221 |
tgttgttgttgttatttgttttgcatcttttagtaaggcttgtgaaaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataa |
50854320 |
T |
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| Q |
216 |
ttttctcattaaagctattaatttgt |
241 |
Q |
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| T |
50854321 |
ttttctcattaaagctattaatttgt |
50854346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 50747050 - 50747136
Alignment:
| Q |
153 |
gcttgtgaaaatacaagtgccatgttttaatgttactactcaaactcaaaagcatgaacataattttctcattaaagctattaattt |
239 |
Q |
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| T |
50747050 |
gcttgtgaaaatacaactaccaagttttaatgttactactcaacctcaaaaacatgaacaaagctttctcacaaaagctgttaattt |
50747136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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