View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17862_low_2 (Length: 819)
Name: NF17862_low_2
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 756; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 5 - 804
Target Start/End: Complemental strand, 38122795 - 38121995
Alignment:
| Q |
5 |
gcatgtccaagaatatagagtaacagtttagaagaataagcaccggctttaatcaatgatctttgtgtggtttcgtttgttttattttaggagatatggt |
104 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38122795 |
gcatgtcctataatatagagtaacagtttagaagaataagcaccggctttaatcaatgatctttgtgtggtttcgtttgttttattttaggagatatggt |
38122696 |
T |
|
| Q |
105 |
tgagttttattggtggtgggacatagatatcagataaacattatcttactatgttgactcaattgactcnnnnnnngacttcatgctcttaaaccattgt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38122695 |
tgagttttattggtggtgggacatagatatcagataaacattatcttactatgttgactcaattgactctttttttgacttcatgctcttaaaccattgt |
38122596 |
T |
|
| Q |
205 |
cttgtagaatatgcatgtggtccttttgaaactttgattattgaatgtatgttaaaactatgtaattttgtacgttagtctgaagatttattgatagggt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38122595 |
cttgtagaatatgcatgtggtccttttgaaactttgattattgaatgtatgttaaaactatgtaattttgtacgttagtctcaagatttattgatagggt |
38122496 |
T |
|
| Q |
305 |
aaagcaatttcaaattattttaaagttttatgggcttgatgacataatgaatgatttt-gtttcaatttgaatcatctgtgaaacttatcttatgaaatc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38122495 |
aaagcaatttcaaattattttaaagttttatgggcttgatgacataatgaatgatttttgtttcaatttgaatcatctgtgaaacttatcttatgaaatc |
38122396 |
T |
|
| Q |
404 |
tcattcggttgtatgttatatcatatgtcaatttttcttaacaacatttcagttgaaggatgcaatattaaactttgctgaggggttgagagttattgga |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38122395 |
tcattcggttgtatgttatatcatatgtcaatttttcttaacaacatttcagttgaaggatgcaatattaaactttgctgaggggttgagagttattgga |
38122296 |
T |
|
| Q |
504 |
gtaaaacctgatgagaaaattgctctttttgctgataactcgtgtcgctggcttgtagcagatcaaggtgtgcaaaattttgtgaatttattacctaagg |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38122295 |
gtaaaacctgatgagaaaattgctctttttgctgataactcgtgtcgctggcttgtagcagatcaaggtgtgcaaaattttgtgaatttattacctaagg |
38122196 |
T |
|
| Q |
604 |
tcctgtttggggtggttgcaatttttcagtttttgttaattttcaaatgccaattctaaaataaaacatgtttggttaaagtgaaacaaaattaattctt |
703 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38122195 |
tcctgtttggggtggttgcaatttttcagtttttgttaattttcaaatgccaattctaaaataaaacatgtttggttaaagtgaaacaaaattaattctt |
38122096 |
T |
|
| Q |
704 |
aaaagcatgcaaagtgttgatcatatatagtggtagttatgtcagttacagtttaatcacatccatgctatattgctatgtgtttagtctaggcatgatg |
803 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38122095 |
aaaagcatgcaaagtggtgatcatatatagtggtagttatgtcagttacagtttaatcacatccatgctatattgctatgtgtttagtctaggcatgatg |
38121996 |
T |
|
| Q |
804 |
g |
804 |
Q |
| |
|
| |
|
|
| T |
38121995 |
g |
38121995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 454 - 576
Target Start/End: Complemental strand, 38136028 - 38135906
Alignment:
| Q |
454 |
agttgaaggatgcaatattaaactttgctgaggggttgagagttattggagtaaaacctgatgagaaaattgctctttttgctgataactcgtgtcgctg |
553 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| || |||| || ||||| |||||||||||||| || |||||||| |
|
|
| T |
38136028 |
agttggaggatgcaatattggactttgctgagggcttgagagttattggagtaagtcccaatgaaaagattgcgctttttgctgataattcttgtcgctg |
38135929 |
T |
|
| Q |
554 |
gcttgtagcagatcaaggtgtgc |
576 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
38135928 |
gcttgtggcagatcaaggtgtgc |
38135906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 575
Target Start/End: Original strand, 35105579 - 35105662
Alignment:
| Q |
492 |
agagttattggagtaaaacctgatgagaaaattgctctttttgctgataactcgtgtcgctggcttgtagcagatcaaggtgtg |
575 |
Q |
| |
|
|||||||||||||||| || ||||| || |||| |||||||| ||||| || ||||| ||||| || ||||||||||||||| |
|
|
| T |
35105579 |
agagttattggagtaaggccggatgaaaagcttgcactttttgcagataattcatgtcgttggctagttgcagatcaaggtgtg |
35105662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University