View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_low_21 (Length: 250)
Name: NF17862_low_21
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 30602876 - 30603106
Alignment:
| Q |
7 |
gtgagatgaagtttgtggctttcaatgcactaatatcttttgtattgaagaaaactttcaag---tgatgatatattaaaagagatagtattctcctatt |
103 |
Q |
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| T |
30602876 |
gtgacatgaagtttgtggctttcaatgcactaatatcttttgtattgaagaaaactttcaagaagtgatgatatattaaaagagatagtattctcctatt |
30602975 |
T |
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| Q |
104 |
tctctgaagctacttactgttttatttcctgagtgtttcatcttgcattatgtctatatttgtattttattatgcagtccgcgtaaaactgtttttctgc |
203 |
Q |
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| T |
30602976 |
tctctgaagctacttactgttctatttcctgagtgtttcatcttgcattatgtctatatttgtattttatcacgcagtccgcgtaaaactgtttttctgc |
30603075 |
T |
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| Q |
204 |
ttcttgtgctttcagcttatacagacaacga |
234 |
Q |
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| T |
30603076 |
ttcttgtgctttcagcttatacagacaacga |
30603106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 12473940 - 12474038
Alignment:
| Q |
71 |
atgatatattaaaagagatagtattctcctatttctctgaagctacttactgttttatttcctgagtgtttcatcttgcattatgtctatatttgtattt |
170 |
Q |
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| T |
12473940 |
atgacatattaaaagagatagtattctcgcatttctctgaagctacttactattctatttcctgagcgtttcatcctgc----tgtctaaatttgtattt |
12474035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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