View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_low_26 (Length: 230)
Name: NF17862_low_26
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 1242662 - 1242876
Alignment:
| Q |
1 |
aggaaattgagaatgactctcaagagatcagtgaaaggaaataggggaatacataatatcatgtgtccttgtaatgtaaaaggcatagatgatctttctt |
100 |
Q |
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| T |
1242662 |
aggaaattgagaatgactctcaagagatcagtgaaaggaaataggggaatacataatatcatgtgtccttgtaatttaaaaagcatagatgatctttctt |
1242761 |
T |
|
| Q |
101 |
gatggcaaacttagcatggtgtgtgacaattataaatgaggattagcttgactaaagtaccccttacaagttacaattcaaattataaagatttgaagta |
200 |
Q |
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| T |
1242762 |
gatggcaaacttagcatggtgtgtgacaattataaatgaggattagcttgactaaagtaccccttacaagttacaattcaaattataaagatttgaagta |
1242861 |
T |
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| Q |
201 |
ttttgtcttcatctt |
215 |
Q |
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|||||| |||||||| |
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| T |
1242862 |
ttttgttttcatctt |
1242876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 1249868 - 1249932
Alignment:
| Q |
83 |
gcatagatgatctttcttgatggcaaacttagcatggtgtgtgacaattataaatgaggattagctt |
149 |
Q |
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| T |
1249868 |
gcatagatgattttccttgatggcagacttagcatg--gtgtgacaattacaaacgaggattagctt |
1249932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 1232451 - 1232495
Alignment:
| Q |
171 |
ttacaattcaaattataaagatttgaagtattttgtcttcatctt |
215 |
Q |
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| T |
1232451 |
ttacaattgaaattataaagatttgaagtatgatgtcttcatctt |
1232495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 1251574 - 1251618
Alignment:
| Q |
171 |
ttacaattcaaattataaagatttgaagtattttgtcttcatctt |
215 |
Q |
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| T |
1251574 |
ttacaattcaaattataaagatttcaagtatgttttcttcatctt |
1251618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 13814184 - 13814220
Alignment:
| Q |
180 |
aaattataaagatttgaagtattttgtcttcatcttg |
216 |
Q |
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| T |
13814184 |
aaattataaagatttgaagtatgttgtctacatcttg |
13814220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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