View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_low_4 (Length: 695)
Name: NF17862_low_4
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_4 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Original strand, 32239716 - 32240131
Alignment:
| Q |
10 |
catcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttga |
109 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
32239716 |
catcatcattatttatagcaaaaggtggataacataaacgaaattgccactgctaacagcgatgggttagttttatttcgaattggaaaaggggatttga |
32239815 |
T |
|
| Q |
110 |
agctatgaatatagtctaaattttattaacagaagttatgacatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttcc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239816 |
agctatgaatatagtctaaattttattaacagaagttatgatatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttcc |
32239915 |
T |
|
| Q |
210 |
aattaggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32239916 |
aattaggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtct |
32240015 |
T |
|
| Q |
310 |
ttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240016 |
ttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatg |
32240115 |
T |
|
| Q |
410 |
gagcacatctgcactc |
425 |
Q |
| |
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||||| |||||||||| |
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| T |
32240116 |
gagcagatctgcactc |
32240131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 327 - 414
Target Start/End: Complemental strand, 32239528 - 32239441
Alignment:
| Q |
327 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32239528 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaactgagtaaatggacagctgcataaatggagca |
32239441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 51165436 - 51165515
Alignment:
| Q |
346 |
tttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactc |
425 |
Q |
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|||||| |||||||||||||| ||| ||||| |||||||||||| ||||||| | | |||||||||| |||||||||| |
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| T |
51165436 |
tttttaattgccacgtgtcatgtatctgtgaaaagaaccgggtaactggacagatataaaaatggagcagatctgcactc |
51165515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 426 - 679
Target Start/End: Original strand, 39073980 - 39074232
Alignment:
| Q |
426 |
atattcgagtctattcctaaaataatagaaagaatttaaaatggaagccaaaaaagtcatgtagatagattccatctcagcacatttcattttattttcc |
525 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39073980 |
atattcgagtctattcctaaaataatagaaagaatttaaaatggaagccaaaaaagtcatgtagatagattccatctcatcacatttcattttattttcc |
39074079 |
T |
|
| Q |
526 |
tgcgcagttgacgctcatgcatgtgttatcgtcagaccatttaattataattagtgttacatcattttcttaattataaaccattttattttatgattgt |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074080 |
tgcgcagttgacgctcatgcatgtgttatcgtcagaccatttaatt-taattagtgttacatcattttcttaattataaaccattttattttatgattgt |
39074178 |
T |
|
| Q |
626 |
cacaattaattcccttgctatcctgatcccatcactttgtaatgctctagataa |
679 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39074179 |
cacaattaattcccttgctatcctgatcccatcactttgtaatgctctagataa |
39074232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 10 - 136
Target Start/End: Original strand, 7266895 - 7267029
Alignment:
| Q |
10 |
catcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagcc--------atgggttagttttatttccaattggaaaagg |
101 |
Q |
| |
|
|||||| |||||||||||| |||||||||| || ||||||||||| ||||||||||| | |||||||| ||||||||||||||| |||||| |
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| T |
7266895 |
catcattattatttatagcgaaaggtggatgacataaacaaaattgtcactgctaatacctctgtagagatgggttaattttatttccaattgaaaaagg |
7266994 |
T |
|
| Q |
102 |
ggatttgaagctatgaatatagtctaaattttatt |
136 |
Q |
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||||||||||||||||||| ||| ||||||||||| |
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| T |
7266995 |
ggatttgaagctatgaataaagtttaaattttatt |
7267029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 7266720 - 7266610
Alignment:
| Q |
308 |
ctttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaa |
407 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||| |||||| || |||| |||| ||||||||||||||||||||||| || |||||||| |
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| T |
7266720 |
ctttcataaattgatgttttt-aatcctagccatggagtttttaattgccatgtatcattcatcggtgaagagaaccgggtaaatggatagatgcataaa |
7266622 |
T |
|
| Q |
408 |
tggagcacatct |
419 |
Q |
| |
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||||||| |||| |
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| T |
7266621 |
tggagcagatct |
7266610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 3e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 27118092 - 27118479
Alignment:
| Q |
10 |
catcatcattatttatagcaaaaggtggatagcagaaacaaaattgccactgctaatagccatgggttagttttatttccaattggaaaaggggatttga |
109 |
Q |
| |
|
|||||| |||||||||||| |||| ||||| || |||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||| | |
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|
| T |
27118092 |
catcatgattatttatagcgaaagatggatgacataaacgaaattgccactgttaatagcgatgggttaattttatttccaattggaaaaggggatttta |
27118191 |
T |
|
| Q |
110 |
agctatgaatatagtctaaattttattaacagaagttatgacatggttgaaatttttctaacatcattcgatgtttaccaatttgtgcgattatgtttcc |
209 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||| |||||||| ||||||||| |||| ||||||| |
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|
| T |
27118192 |
agctatgaatacagtctaaaatttattaacagaagttatgatatggttgaa---tttcgaacatcatgtgatgtttatcaatttgtgtgattctgtttcc |
27118288 |
T |
|
| Q |
210 |
aattaggaaaggggattgtagaagacgatagaacatagagcggcagaactgatgcgagaacagaggaacggttgttgttacagtgtgtttcaacgtgtct |
309 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||||| ||| || |
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|
| T |
27118289 |
aattaggaaatgggattgtagaagacgatagaacatagagc--cagaa------cgagagcagaggaacggtggttgttacagtgtgtttcactgtgact |
27118380 |
T |
|
| Q |
310 |
ttcataaaatgatgttttttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaat |
408 |
Q |
| |
|
|||||||| ||||| |||||||| ||| | || | ||||| ||||||| ||||||||||| || || ||||| ||||||| ||||||||||||||| |
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|
| T |
27118381 |
ttcataaattgatgctttttaattctaactctcgaaattttaattgccacatgtcatccatccgtaaaaagaactgggtaaacagacagctgcataaat |
27118479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 27117852 - 27117754
Alignment:
| Q |
327 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactc |
425 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||| ||||| ||||| |||| |
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|
| T |
27117852 |
tttaatcctagctatcggatttttagttgccatgtgtcatccatcggtgaagagaaccgggtaaatggagaactgcataaattgagcagatctggactc |
27117754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 53371909 - 53372007
Alignment:
| Q |
327 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactc |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53371909 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcagatctgcactc |
53372007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 23011041 - 23010943
Alignment:
| Q |
327 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactc |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
23011041 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccaggtaaatggacagctgcataaatggagcagatctgcactc |
23010943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 3028 - 3126
Alignment:
| Q |
327 |
tttaatcctagccatctgatttttagttgccacgtgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactc |
425 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3028 |
tttaatcctaaccatctgatttttagttgccacgtgtcatccatcagtgaagagaatcgggtaaatggacagctgcataaatggagcagatctgcactc |
3126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 41763852 - 41763788
Alignment:
| Q |
361 |
tgtcatccatcagtgaagagaaccgggtaaatggacagctgcataaatggagcacatctgcactc |
425 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||| |||||||||| |
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| T |
41763852 |
tgtcatccatcggtgaagagaatcggataaatggacagttgcataaatggagcagatctgcactc |
41763788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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