View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17862_low_5 (Length: 663)
Name: NF17862_low_5
Description: NF17862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17862_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 14 - 388
Target Start/End: Original strand, 25010967 - 25011341
Alignment:
| Q |
14 |
catcccataacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca |
113 |
Q |
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| T |
25010967 |
catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca |
25011066 |
T |
|
| Q |
114 |
tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011067 |
tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
25011166 |
T |
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| Q |
214 |
cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactca |
313 |
Q |
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| T |
25011167 |
cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca |
25011266 |
T |
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| Q |
314 |
tgtcagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaa |
388 |
Q |
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| T |
25011267 |
tgacagtctaatcacgatccaaccatcactaatgtgctgactgtgtgaatacatgaaatttgtgactgcaccaaa |
25011341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 386 - 652
Target Start/End: Original strand, 25011439 - 25011706
Alignment:
| Q |
386 |
aaaagattgtaaacaaattccactaagctggtgaaactagtatatctgaaa-cacgttgctttgttaaattatcgtttcgtgtaagtgctatacactatt |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
25011439 |
aaaagattgtaaacaaattccactaagctggtgaaactagtatatctgaaaacacgttgctttgtcaaattatcgtttcgaaaaagtgctatacactatt |
25011538 |
T |
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| Q |
485 |
cgaagaattccacaggattgaagagtaagtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatc |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011539 |
cgaagaattccacaggattgaagagtaagtttgaagagaaattattgaaaccgtcaagttgagtactcacagagtgaagaatccctttggttgtaacatc |
25011638 |
T |
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| Q |
585 |
aaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctctgcctgtgtgcatcttgat |
652 |
Q |
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| T |
25011639 |
aaatgcacctgcagtaccaccagcagcactgatccagtcaacgatcctctgcctgtgtgcatcttgat |
25011706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
| Q |
273 |
aatgatcattttacaattgtcccatataggatttgaactc |
312 |
Q |
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| T |
4752802 |
aatgatcattttacaactgttccatataggatttgaactc |
4752841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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