View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17863_high_11 (Length: 250)
Name: NF17863_high_11
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 55330286 - 55330495
Alignment:
| Q |
19 |
acatctccactaaactcaatattttgttacataaattataaaataaacatctgtacacaaagaataggaaaacatgttttcacatataattaaaaaatga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55330286 |
acatctccactaaactcaatattttgttacataaattataaaataaacatctgtacacaaagaataggaaaacatgttttcacatataattaaaa----- |
55330380 |
T |
|
| Q |
119 |
atttaatgaatcaacgttatgtgcagttgaaacaaattgctcactaatccagctacatcagtttccttgtgtcatacgcaattagaagagcttgttagca |
218 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
55330381 |
----aatgaatcaatgttatgtgcaattgaaacaacttgctcactaatccagctacatcagtttccttgtgtcatacgcaattagaacagcttgttagca |
55330476 |
T |
|
| Q |
219 |
aattcatcaacatcaattc |
237 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
55330477 |
aattcatcaacatcaattc |
55330495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University