View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_high_3 (Length: 364)
Name: NF17863_high_3
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 24 - 347
Target Start/End: Original strand, 2106690 - 2107013
Alignment:
| Q |
24 |
ggctcctttgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttt |
123 |
Q |
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| T |
2106690 |
ggctcctttgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttt |
2106789 |
T |
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| Q |
124 |
tctaaacaatttaccaacatgttattgttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaatgaggctttgga |
223 |
Q |
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| T |
2106790 |
tctaaacaatttaccaacatgttattgttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaatgaggctttgga |
2106889 |
T |
|
| Q |
224 |
gctaagggataactttcacttgttcagcatcttttacattcctagggtatatatttagcaatttgttctattatgtttaagttgcatctttctcaattga |
323 |
Q |
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| T |
2106890 |
gctaagggataactttcacttgttcagcatcttttacattcctagggtatatatttagcaatttgttctattatgtttaagttgcatctttctcaattga |
2106989 |
T |
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| Q |
324 |
gcactgctttgtgaagttgaaaac |
347 |
Q |
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| T |
2106990 |
gcactgctttgtgaagttgaaaac |
2107013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 2098239 - 2098488
Alignment:
| Q |
32 |
tgaattcatttagttttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttttctaaaca |
131 |
Q |
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| T |
2098239 |
tgaattcatttagtttcatattctt-cctaattggttagatattgttaagatttactcaccactactcttcattgtttatacatttttcttttctaaaca |
2098337 |
T |
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| Q |
132 |
atttaccaacat--gttattgttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaatgaggctttggagctaag |
229 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
2098338 |
atttaccaacatatgttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaag |
2098437 |
T |
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| Q |
230 |
ggataactttcacttgttcagcatcttttacattcctagggtatatattta |
280 |
Q |
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| T |
2098438 |
ggataactttcacttgttcagcatcttttacattcctagggtatttattta |
2098488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 2047833 - 2047926
Alignment:
| Q |
24 |
ggctcctttgaattcatttagttt-tatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacattt |
117 |
Q |
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| T |
2047833 |
ggctcctttggattcatttaattaatatattctt-cctaattggttagatattgttaatatttactcattgttactttccattttttatacattt |
2047926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 2088541 - 2088674
Alignment:
| Q |
113 |
catttttcttttctaaacaatttaccaacat--gttattg-ttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgc |
209 |
Q |
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| T |
2088541 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
2088640 |
T |
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| Q |
210 |
aatgaggctttggagctaagggataactttcact |
243 |
Q |
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| T |
2088641 |
aacgaggctttggagctgaagggtgactttcact |
2088674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 2048176 - 2048225
Alignment:
| Q |
194 |
tttaaggaacttatgcaatgaggctttggagctaagggataactttcact |
243 |
Q |
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| T |
2048176 |
tttaaggaacttatgcgatgaggctttggagctagcagataactttcact |
2048225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 2098485 - 2098533
Alignment:
| Q |
299 |
tttaagttgcatctttctcaattgagcactgctttgtgaagttgaaaac |
347 |
Q |
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| T |
2098485 |
tttaagttgctcctttctcaattgagcattgctttgtgaagttggaaac |
2098533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 2054417 - 2054498
Alignment:
| Q |
192 |
tatttaaggaacttatgcaatgaggctttggagctaagggataactttcacttgttcagcatcttttacattcctagggtat |
273 |
Q |
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| T |
2054417 |
tatttatggaacttgtgcaatgaggctttgcagctgaaggaaagctttcactcattcagcatccaacacattcctagggtat |
2054498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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