View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_high_4 (Length: 325)
Name: NF17863_high_4
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 35523437 - 35523565
Alignment:
| Q |
1 |
gcacacaagttcacatgaacaagaggttggactctcttcagccccaatgagatgggttggtgaaccacaggtatattttcaactttttcttttatacaaa |
100 |
Q |
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| T |
35523437 |
gcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattggtgaaccacaggtatattttcaactttttcttttatacaaa |
35523536 |
T |
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| Q |
101 |
aaagatacatcatgttcattcaatttacattttc |
134 |
Q |
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| T |
35523537 |
a-----atatcatgttcattcaatttacattttc |
35523565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 35506041 - 35506173
Alignment:
| Q |
1 |
gcacacaagttcacatgaacaagaggttggactctcttcagccccaatgagatgggttggtgaaccacaggtatat--tttcaactttttcttttataca |
98 |
Q |
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| T |
35506041 |
gcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattggtgaaccacaggtatatacattcaacttttt-atatatac- |
35506138 |
T |
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| Q |
99 |
aaaaagatacatcatgttcattcaatttacatttt |
133 |
Q |
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| T |
35506139 |
aaaaagatacatcatgttcattcaatttacttttt |
35506173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 35535859 - 35535986
Alignment:
| Q |
1 |
gcacacaagttcacatgaacaagaggttggactctcttcagccccaatgagatgggttggtgaaccacaggtatat--tttcaactttttcttttataca |
98 |
Q |
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| T |
35535859 |
gcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattggtgaaccacaggtatatacattcaacttttt-atatatac- |
35535956 |
T |
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| Q |
99 |
aaaaagatacatcatgttcattcaatttac |
128 |
Q |
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| T |
35535957 |
aaaaagatacatcatgttcattcaatttac |
35535986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 35523637 - 35523727
Alignment:
| Q |
208 |
cattgttaatgtaaaaaagtttacattgtcaatcaatcacaaatgttaaatcattaaaaatgtttgacatttgtattttatactatcataa |
298 |
Q |
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| T |
35523637 |
cattgttaatgtaaaaaagtttacattatcaatcaatcacaactgttaaatcattaaaaatgtttgacatttgtgttttactctatcataa |
35523727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 1833451 - 1833359
Alignment:
| Q |
1 |
gcacacaagttcacatgaacaagaggttggactctcttcagccccaatgagatgggttggtgaaccacaggtatattttcaactttttctttt |
93 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||| |||| |
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| T |
1833451 |
gcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccacaagtatactttcaattttttttttt |
1833359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 29364783 - 29364747
Alignment:
| Q |
213 |
ttaatgtaaaaaagtttacattgtcaatcaatcacaa |
249 |
Q |
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| T |
29364783 |
ttaatgtaaaaaagtttacattgcccatcaatcacaa |
29364747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 7518077 - 7518029
Alignment:
| Q |
227 |
tttacattgtcaatcaatcacaaatgttaaatcattaaaaatgtttgac |
275 |
Q |
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|||||| ||||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
7518077 |
tttacactgtcaatcaatcataactgttagatcataaaaaatgtttgac |
7518029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 2160597 - 2160637
Alignment:
| Q |
227 |
tttacattgtcaatcaatcacaaatgttaaatcattaaaaa |
267 |
Q |
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|||||||||||||||| ||| ||| |||||||||||||||| |
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| T |
2160597 |
tttacattgtcaatcagtcataaacgttaaatcattaaaaa |
2160637 |
T |
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