View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_1 (Length: 650)
Name: NF17863_low_1
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_1 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 358 - 650
Target Start/End: Original strand, 41921480 - 41921772
Alignment:
| Q |
358 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcattttt |
457 |
Q |
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| T |
41921480 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttgctactttatatgccaagacttatgcattttt |
41921579 |
T |
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| Q |
458 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtatcaaaataatcacaaagtaagcttttttatacacatgaaag |
557 |
Q |
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| T |
41921580 |
ccttaatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
41921679 |
T |
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| Q |
558 |
ttatatatgttcatatttctaacttttgtctatagtatcctccacgagaacatgatgatccatccccttatcttctggttgtatggcaaccag |
650 |
Q |
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| T |
41921680 |
ttatattagttcatatttctaacttttgtttatagtatccttcacgagaacatgatgatccatccccttatcttctggttgtatggcgaccag |
41921772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 111 - 306
Target Start/End: Original strand, 41921273 - 41921468
Alignment:
| Q |
111 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
210 |
Q |
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| T |
41921273 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
41921372 |
T |
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| Q |
211 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
306 |
Q |
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| T |
41921373 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
41921468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 41921146 - 41921239
Alignment:
| Q |
17 |
gaagaaggtattgagagcgatgaagaagatattgaggatattccaacatttaacctcagtagtcaagaatcatcatcatcatgcctgccaatgtatg |
113 |
Q |
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| T |
41921146 |
gaagaagatattgagagtgatgaagaagatattgaggatattccaacatttaacatcagtagtcaagaatca---tcatcatgtctgccaatgtatg |
41921239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 6e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 384 - 650
Target Start/End: Original strand, 1698822 - 1699105
Alignment:
| Q |
384 |
ttttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttt--tcctttatctgttcagttatgtcct |
481 |
Q |
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| T |
1698822 |
ttttaacaacatgtagatatttcaaatttaaataaattacttactacttcatatgctaagac--atgcatttttttcctttatctattcagttatgtcct |
1698919 |
T |
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| Q |
482 |
cacggataatcaccctcttctagctgaggtaggtatcaaaataatcacaaagtaagcttttttatacacatgaaagttatatat---------------- |
565 |
Q |
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| T |
1698920 |
cacggataatcatcctctcctaactgaggtaggtatcaaaataatcacgaagtaaattgttatacacacatgaaagttatatatatatatatatatatac |
1699019 |
T |
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| Q |
566 |
gttcatatttct-aacttttgtctatagtatcctccacgagaacatgatgatccatccccttatcttctggttgtatggcaaccag |
650 |
Q |
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| T |
1699020 |
attcatatttctcgttttttttttacagtatcctccacgagaacatgatgatccttccccttatcttctggttatatggctaccag |
1699105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 1695370 - 1695489
Alignment:
| Q |
121 |
atctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgtaagtttctcac |
220 |
Q |
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| T |
1695370 |
atctttagttgcattacatccaaatgctacaatcaatcgtttatcaaaaatgaaaaatgctagccgcctgaaaactgagcgtttagtgtaagtttctcac |
1695469 |
T |
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| Q |
221 |
tttcctatattcttatgtta |
240 |
Q |
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| T |
1695470 |
tttcctatattcttatgtta |
1695489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 458 - 565
Target Start/End: Original strand, 36000637 - 36000744
Alignment:
| Q |
458 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtatcaaaataatcacaaagtaagcttttttatacacatgaaag |
557 |
Q |
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| T |
36000637 |
cctttatttgttcagttatgttcttaaggataatcaccctctcctagttgaggtaagtcccaaaataatcacaaagtacactttaatacacacatcaaaa |
36000736 |
T |
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| Q |
558 |
ttatatat |
565 |
Q |
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| T |
36000737 |
ttatatat |
36000744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 395 - 529
Target Start/End: Original strand, 1309963 - 1310097
Alignment:
| Q |
395 |
aatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttttcctttatctgttcagttatgtcctcacggataatcac |
494 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| || |||| | | |||| ||||||| |||||||||||||| |||||| ||||| |
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| T |
1309963 |
aatagatatttcaaatttaaagaagttacttactactttgcatgctaatccttacgtaattttgttttatctattcagttatgtcctaacggatgatcac |
1310062 |
T |
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| Q |
495 |
cctcttctagctgaggtaggtatcaaaataatcac |
529 |
Q |
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| T |
1310063 |
cctctcctagtcaaggtaggtagcaaaataatcac |
1310097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 644
Target Start/End: Complemental strand, 1207759 - 1207710
Alignment:
| Q |
595 |
tcctccacgagaacatgatgatccatccccttatcttctggttgtatggc |
644 |
Q |
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| T |
1207759 |
tcctccacgagatgatgttgatccttccccttatcttctgcttgtatggc |
1207710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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