View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17863_low_10 (Length: 258)

Name: NF17863_low_10
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17863_low_10
NF17863_low_10
[»] chr7 (2 HSPs)
chr7 (29-248)||(14743943-14744161)
chr7 (29-246)||(14737426-14737639)
[»] chr5 (2 HSPs)
chr5 (29-195)||(17583149-17583315)
chr5 (29-246)||(17589144-17589359)
[»] chr3 (4 HSPs)
chr3 (34-103)||(27521856-27521924)
chr3 (34-103)||(27522746-27522814)
chr3 (32-66)||(23688166-23688200)
chr3 (32-66)||(24060403-24060437)
[»] chr8 (3 HSPs)
chr8 (32-92)||(23237993-23238052)
chr8 (37-103)||(35066149-35066214)
chr8 (130-170)||(4438288-4438328)
[»] chr1 (1 HSPs)
chr1 (41-101)||(10057655-10057714)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 14744161 - 14743943
Alignment:
Q  29 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14744161 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaac- 14744063  T
Q  129 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaaatcaccccaaaaccacgtattccttttatacat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||||||   |||||||||||||||    
T  14744062 aatgacaccaacaatacaacattcttataaaataatttgtttcaagggtataacggaaagtaaacaagtcaccccaaaaccatccattccttttatacat 14743963  T
Q  229 aactagcgtcccacaggttc 248  Q
    ||||||||||||| ||||||    
T  14743962 aactagcgtcccataggttc 14743943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 14737639 - 14737426
Alignment:
Q  29 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 128  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||   | |||||||||| ||||||||||| ||  |||||    
T  14737639 aaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatgg-tggttgagcagagccttttcttagagggggccaaatcgtt--gaacg 14737543  T
Q  129 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaaatcaccccaaaaccacgtattccttttatacat 228  Q
     ||||||||||||||| |||||| ||||| |  ||||||||||||||||||||||| |||| ||||| ||| | |||||| || |||| | |||||| ||    
T  14737542 tatgacaccaacaataaaacattattatagacaaatttgtttcaatggtataactgtaagtgaacaagtca-ctcaaaacaacatatttcctttatatat 14737444  T
Q  229 aactagcgtcccacaggt 246  Q
    |||||| |||||||||||    
T  14737443 aactagtgtcccacaggt 14737426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 17583149 - 17583315
Alignment:
Q  29 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 128  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17583149 aaatcaaccaactcaattcccacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 17583248  T
Q  129 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17583249 aatgacaccaacaatacaacattcttataaaataatttgtttcaagggtataactggaagtaaacaa 17583315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 17589144 - 17589359
Alignment:
Q  29 aaatcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttcttagaaggggccaaatctttttgaacg 128  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||||   | |||||||||| ||||||||||| |||||||||    
T  17589144 aaatcaacaaactcaatccctacaacactcgatccaaaggtgaacccaatgg-tggttgagcagagccttttcttagagggggccaaatcgttttgaacg 17589242  T
Q  129 aatgacaccaacaatacaacattcttataaaataatttgtttcaatggtataactggaagtaaacaaatcaccccaaaaccacgtattccttttatacat 228  Q
     ||||||||||||||| |||||| ||||| |  ||||||||||||||||||||||| |||| ||||| ||| | |||||| || |||| | |||||| ||    
T  17589243 tatgacaccaacaataaaacattgttatagacaaatttgtttcaatggtataactgaaagtgaacaagtca-ctcaaaacaacatatttcctttatatat 17589341  T
Q  229 aactagcgtcccacaggt 246  Q
    |||||| |||||||||||    
T  17589342 aactagtgtcccacaggt 17589359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 27521856 - 27521924
Alignment:
Q  34 aacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttctt 103  Q
    |||||||||||||||||||||||||||||||||  | |||||||| || |||||||||| || |||||||    
T  27521856 aacaaactcaattcctacaacactcgatccaaagataaacccaaa-ggcggttgagcaacaccttttctt 27521924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 27522746 - 27522814
Alignment:
Q  34 aacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttctt 103  Q
    |||||||||||||||||||||||||||||||||  | |||||||| || |||||||||| || |||||||    
T  27522746 aacaaactcaattcctacaacactcgatccaaagataaacccaaa-ggcggttgagcaacaccttttctt 27522814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 23688166 - 23688200
Alignment:
Q  32 tcaacaaactcaattcctacaacactcgatccaaa 66  Q
    |||||||| ||||||||||||||||||||||||||    
T  23688166 tcaacaaattcaattcctacaacactcgatccaaa 23688200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 24060403 - 24060437
Alignment:
Q  32 tcaacaaactcaattcctacaacactcgatccaaa 66  Q
    |||||||| ||||||||||||||||||||||||||    
T  24060403 tcaacaaattcaattcctacaacactcgatccaaa 24060437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 23237993 - 23238052
Alignment:
Q  32 tcaacaaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaa 92  Q
    |||||||| |||||| |||||||||| |||| |||||||||| ||| ||||||||||||||    
T  23237993 tcaacaaattcaattactacaacactagatctaaacgtgaacacaa-gggtggttgagcaa 23238052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 35066214 - 35066149
Alignment:
Q  37 aaactcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttctt 103  Q
    |||||||||||||||||||||||||||||   ||||||| ||||  |||||||||| || |||||||    
T  35066214 aaactcaattcctacaacactcgatccaagaatgaaccc-aaggacggttgagcaacaccttttctt 35066149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 170
Target Start/End: Complemental strand, 4438328 - 4438288
Alignment:
Q  130 atgacaccaacaatacaacattcttataaaataatttgttt 170  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  4438328 atgacaccaacaatataacattattataaaaaaatttgttt 4438288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 10057714 - 10057655
Alignment:
Q  41 tcaattcctacaacactcgatccaaacgtgaacccaaagggtggttgagcaagacattttc 101  Q
    |||||||||| |||||||| | |||| ||||||||||| ||||||||||||| || |||||    
T  10057714 tcaattcctataacactcgtttcaaaggtgaacccaaa-ggtggttgagcaacactttttc 10057655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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