View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_11 (Length: 258)
Name: NF17863_low_11
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 3399481 - 3399236
Alignment:
| Q |
1 |
tctagcaccagcttgtgtcggatgcaaaacacaccctcaatatgaagtgtcgatgctacctagctttctagcaagcaaggaaaatgaagaacattttctc |
100 |
Q |
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| T |
3399481 |
tctagcaccagcttgtgtcggatgcaaaacacaccctcaatatgaagtgtcgatgctacctagctttctagcaagcaaggaaaatgaagaacattttctc |
3399382 |
T |
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| Q |
101 |
taacttttctcagcnnnnnnnacttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtact |
200 |
Q |
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| T |
3399381 |
taacttttctcagctttttttacttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtact |
3399282 |
T |
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| Q |
201 |
gattctttgcaggagatgcaaaagctgagacttttaaaacttgatg |
246 |
Q |
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| T |
3399281 |
gattctttgcaggagatgcaaaagctgagacttttaaaacttgatg |
3399236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 31175077 - 31175318
Alignment:
| Q |
5 |
gcaccagcttgtgtcggatgcaaaacacaccctcaatatgaagtgtcgatgctacctagctttctagcaagcaaggaaaatgaagaacattttctctaac |
104 |
Q |
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| T |
31175077 |
gcaccaacttgtgtcggatgcaaaatacgtcctcaatatgaagtgtcgatgctacctagctttctagcaagcaaggaaaatgaaaaacattttcccttac |
31175176 |
T |
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| Q |
105 |
ttttctcagcnnnnnnnacttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtactgatt |
204 |
Q |
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| T |
31175177 |
ttttctcagctttttttacttcacatgcagggaacagatactattgagggaatgattttgaagtgccaaagaacaggcaggattatatttggtactaatt |
31175276 |
T |
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| Q |
205 |
ctttgcaggagatgcaaaagctgagacttttaaaacttgatg |
246 |
Q |
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| T |
31175277 |
ctttccaggagatgcaaaagctgaggcttttaaaacttgatg |
31175318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 8372508 - 8372384
Alignment:
| Q |
122 |
acttcacatgcagggaacatatactattgtgggaatgattttgaagtaccaaagaacaggcagaattatatttggtactgattctttgcaggagatgcaa |
221 |
Q |
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||||| |||| |||||||| | ||| ||| ||| |||||||||||| |||||||||||||||||| ||||| ||| || |||| ||||||||| || |
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| T |
8372508 |
acttctcatgtagggaacaaaaactgttgagggtttgattttgaagtggcaaagaacaggcagaatttgctttggcactaatgctttccaggagatggaa |
8372409 |
T |
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| Q |
222 |
aagctgagacttttaaaacttgatg |
246 |
Q |
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| T |
8372408 |
aaactgaggcttttaaaacttgatg |
8372384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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