View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17863_low_15 (Length: 241)
Name: NF17863_low_15
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 37070731 - 37070947
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37070731 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
37070830 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37070831 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
37070930 |
T |
|
| Q |
209 |
gcataatgaagtggaag |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37070931 |
gcataatgaagtggaag |
37070947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 37080564 - 37080780
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||| |||| ||||| |
|
|
| T |
37080564 |
gaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgc |
37080663 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||| ||||||||||||||||||| |
|
|
| T |
37080664 |
tagatgaattgggaaatagccatatttgtccctttgattggtgcaacatttacatttgccagttaaataaacaacacctacaaggtaacctatagatgct |
37080763 |
T |
|
| Q |
209 |
gcataatgaagtggaag |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37080764 |
gcataatgaagtggaag |
37080780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 36953709 - 36953493
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||||||| ||||| ||||| ||||||||||| || |||| || ||||| |||| ||||| |
|
|
| T |
36953709 |
gaagaatattacgctcatgagaagtgtcaagcatctctgtgggatcaggacaatattccaacaacttcttcactacttccacatggccaccatacgatgc |
36953610 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||||||||||||||| || ||| |||| ||||||||| |||||||||||||| | | |
|
|
| T |
36953609 |
tagatgaattgggaaataaccatatttgtccctttgaatggtgcaacatttacacatttcaattaattgaacaacgccttcaaggtaacctatagtcgat |
36953510 |
T |
|
| Q |
209 |
gcataatgaagtggaag |
225 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
36953509 |
gcgtaatgaagaggaag |
36953493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 36947254 - 36947059
Alignment:
| Q |
30 |
aagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgctagatgaattgagaaatagcc |
129 |
Q |
| |
|
||||||| |||||||| ||||||| ||||| ||||| ||||||||||| || |||| || ||||| |||| ||||||||||||||||| |||||| || |
|
|
| T |
36947254 |
aagtgtcgagcatctctctgggatcaggacaatattccaacaacttcttcactacttccacatggccaccataagatgctagatgaattgggaaataacc |
36947155 |
T |
|
| Q |
130 |
atatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgctgcataatgaagtggaag |
225 |
Q |
| |
|
|| |||||||||||| | ||||| ||||| ||| ||||||||||||| | ||| |||| ||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
36947154 |
attattgtccctttgaattgtgcagcatttgcatgtgccaagtaataaataaacaccttcaaggtaacctatagatgctgcgtaatgaagaggaag |
36947059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 36964745 - 36964619
Alignment:
| Q |
103 |
agatgctagatgaattgagaaatagccatatttgtcc---ctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacct |
199 |
Q |
| |
|
|||||||| |||||||| ||| |||||||| |||| |||||| | ||||| ||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
36964745 |
agatgctaaatgaattggaaaagagccatatatgtcatcactttgaattgtgcagcatttgcatatgccaagtaataattcaacaccttcaaggtaacct |
36964646 |
T |
|
| Q |
200 |
atagatgctgcataatgaagtggaagt |
226 |
Q |
| |
|
|||||| |||| |||||||| |||||| |
|
|
| T |
36964645 |
atagatactgcgtaatgaagaggaagt |
36964619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 12494537 - 12494753
Alignment:
| Q |
9 |
gaagaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgc |
108 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||||||||||||| || || |||| || ||||| |||| ||||| |
|
|
| T |
12494537 |
gaagaatattacgtttatgagaagtgtcaagcatctctgtgggatcaggacaatattctaacaactttttcactacttccacatggccaccatatgatgc |
12494636 |
T |
|
| Q |
109 |
tagatgaattgagaaatagccatatttgtccctttgattggtgcaacatttacatatgccaagtaataattcaacgcctttaaggtaacctatagatgct |
208 |
Q |
| |
|
|| |||||||| |||||| | |||||||||||||| | ||||| ||||| ||| || ||| |||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
12494637 |
tacatgaattgggaaataacataatttgtccctttgaattgtgcagcatttgcatttgtcaattaataattcaacaccttcaaggtaacctatagatgct |
12494736 |
T |
|
| Q |
209 |
gcataatgaagtggaag |
225 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
12494737 |
gcgtaatgaagtggaag |
12494753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University