View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_21 (Length: 221)
Name: NF17863_low_21
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 42778264 - 42778458
Alignment:
| Q |
18 |
accattaagtacaaatatcttatatttttaaaccttaataatctaatgagcaagatatatctgtttgaatttcattacttcctatttgcaatatctatgc |
117 |
Q |
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| T |
42778264 |
accattaagtacaaatatcttatatttttaaaccttaataatctaatgagcaagatatatctgtttgaatttcattacttcctatttgcaatatctatgc |
42778363 |
T |
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| Q |
118 |
ctaggcctaattggttcaaacactctttttaaaccattcctttcattaggttgtgcatgaatccaaagttcaaacaaacacatttcttgtctgtg |
212 |
Q |
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| T |
42778364 |
ctaggcctaattggttcaaacactctttttaaaccattcctttcattaggttgtgcatgaatccaaagttcaaacaaacacatttcttgtctgtg |
42778458 |
T |
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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 9357984 - 9358051
Alignment:
| Q |
30 |
aaatatcttatatttttaaaccttaataatctaatgagcaagatatatctgtttgaatttcattactt |
97 |
Q |
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| T |
9357984 |
aaatagcttataattggaaaacttaataatctaatgagcaacatatctctctttgaatttcattactt |
9358051 |
T |
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