View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_3 (Length: 368)
Name: NF17863_low_3
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 44095451 - 44095825
Alignment:
| Q |
1 |
cttgcatttcctaaagttcttggtggtgttattcgacgggtcatgcacgaagtttacgtgaaaaatactactccaatgttaacatatatttattcgtcaa |
100 |
Q |
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| T |
44095451 |
cttgcatttcctaaagttcttggtggtgttattcgacgggtcatgcacgaagtttacgtgaaaaatactactccaatgttaacatatatttattcgtcaa |
44095550 |
T |
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| Q |
101 |
aataaaatgaatcaaagataaagnnnnnnnnntcttctaagttatatttgtattggtatgtttagagaaaaataaatggaaaggatagttttctataaca |
200 |
Q |
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| T |
44095551 |
aataaaatgaatcaaagataaagaaaaaaaa-tcttctaagttatatttgtattggtatttttagagaaaaataaatggaaaggatagttttctataaca |
44095649 |
T |
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| Q |
201 |
tcnnnnnnnnnnnn--------ggatagttttctagaacaaagtgagtaaatttataaagtggagtgaaataagtttgtaaataatacttttgaattttc |
292 |
Q |
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| T |
44095650 |
tcaaagaaaaaaaaaaaaaaaaggatagttttctagaacaaagtgagtaaatttatgaagtggagtgaaataagtttgtaaataatacttttgaattttc |
44095749 |
T |
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| Q |
293 |
tcacgtaatagaaattggataagttatcaaaattattcaaagaaaatatatgccctaccttttctttttgcaactt |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44095750 |
tcacgtaatagaaattggataagttatcaaaattattcaaagaaaatctatgccctaccttttctttttgcaactt |
44095825 |
T |
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