View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_7 (Length: 310)
Name: NF17863_low_7
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 14744695 - 14744386
Alignment:
| Q |
1 |
ttgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14744695 |
ttgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaacca |
14744596 |
T |
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| Q |
101 |
tgattagggttgcaaaatacaaacatcccaaccacttgacctacacctttagattttaattattttgatagattaaacatatatcttaaaattatggccc |
200 |
Q |
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| T |
14744595 |
tgattagggttgcaaaatacaaacatcccaaccacttgacctacacctttagattttaattattttgatagattaaacatatatcttaaaattatggccc |
14744496 |
T |
|
| Q |
201 |
cttcatnnnnnnnttattggctccgccattaaacttgttgaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgcctttg |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14744495 |
cttcataaaataattattggctccgccattaaacttgttgaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgctcttg |
14744396 |
T |
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| Q |
301 |
ctactcctct |
310 |
Q |
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||||||||| |
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| T |
14744395 |
ttactcctct |
14744386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 17582641 - 17582919
Alignment:
| Q |
1 |
ttgatccttgattcgtccatttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaacca |
100 |
Q |
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| T |
17582641 |
ttgatccttgattcgtccacttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaacca |
17582740 |
T |
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| Q |
101 |
tgattagg---gttgcaaaatacaaacatcccaaccacttgacctacacctttagattttaattattttgatagattaaacatatatcttaaaattatgg |
197 |
Q |
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| T |
17582741 |
tgattagggttgttgcaaaatacaaacatcccaaccacttgacctacacctt-------------------tagattaaacatatatctaaaaattatgg |
17582821 |
T |
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| Q |
198 |
ccccttcatnnnnnnnttattggctccgccattaaacttgttgaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgc |
295 |
Q |
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| T |
17582822 |
ccccttcataaaaaaattattggctccgccattaaacttgttgaggaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcgcccttttgc |
17582919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 34515393 - 34515205
Alignment:
| Q |
18 |
catttttatcctttcactagtgttttttgcatttttaaacaaaagatgcgatgaaaatattgcacaatgcaagtattgaaccatgattagggttgcaaaa |
117 |
Q |
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|||||||| ||| ||| ||| ||||||| ||||||| |||||| |||| |||||||| || | | |||||||||||||||||| || ||||||||||| |
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| T |
34515393 |
catttttagcctatcagcagtattttttgtatttttatacaaaaaatgccatgaaaatgctgtaaattgcaagtattgaaccatggtttgggttgcaaaa |
34515294 |
T |
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| Q |
118 |
tacaaacatcccaaccacttgacctacacctttagattttaattattttgatagattaaacatatatcttaaaattatggccccttcat |
206 |
Q |
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||||||||||| ||||||||||| | | || |||||| |||||| ||| | |||||| |||||| |||||||||||||||| |||| |
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| T |
34515293 |
tacaaacatccaaaccacttgacatgtagctgtagattaaaattatagtgacatattaaatatatattttaaaattatggccccctcat |
34515205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 17588843 - 17588964
Alignment:
| Q |
175 |
aaacatatatcttaaaattatggccccttcatnnnnnnnttattggctccgccattaaacttgtt-gaggaaaacatggtcgaaaaaataaatgataaaa |
273 |
Q |
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||||||||||||||||| |||||||||| ||| || ||| |||||||| ||||||||| ||| |||| ||||| ||||||||| |||| ||| |
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| T |
17588843 |
aaacatatatcttaaaaatatggcccctacataaaaaaattcttgactccgccacaaaacttgttagagaaaaatatggttgaaaaaatatttgatgaaa |
17588942 |
T |
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| Q |
274 |
agtcgatgtagcacccttttgc |
295 |
Q |
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| T |
17588943 |
agccgatgcaacacctttttgc |
17588964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 206
Target Start/End: Complemental strand, 51766495 - 51766400
Alignment:
| Q |
111 |
tgcaaaatacaaacatcccaaccacttgacctacacctttagattttaattattttgatagattaaacatatatcttaaaattatggccccttcat |
206 |
Q |
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||||| |||||||||||||| ||| |||||||| ||||||||| |||||| | ||| | |||||| |||||| ||||||||||||| |||||| |
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| T |
51766495 |
tgcaatatacaaacatcccagccatttgacctagggctttagattgtaattactgtgacatattaaatatatatagtaaaattatggcctcttcat |
51766400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 22829745 - 22829797
Alignment:
| Q |
243 |
gaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgc |
295 |
Q |
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||||||||||| |||||||||||||| |||| |||||| ||||||||||||| |
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| T |
22829745 |
gaaaacatggttaaaaaaataaatgatgaaaaatcgatgcagcacccttttgc |
22829797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 22837458 - 22837510
Alignment:
| Q |
243 |
gaaaacatggtcgaaaaaataaatgataaaaagtcgatgtagcacccttttgc |
295 |
Q |
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|||| |||||| |||||||||||| || || | |||||||||||||||||||| |
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| T |
22837458 |
gaaatcatggttgaaaaaataaattatgaataatcgatgtagcacccttttgc |
22837510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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