View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_8 (Length: 293)
Name: NF17863_low_8
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 46511748 - 46512027
Alignment:
| Q |
1 |
taaattcaataaggcgatctctccttaatcannnnnnnnnn--gaaaatttatcaatataaaactctagcacaattgtctagcagatgagccatgtcgta |
98 |
Q |
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| T |
46511748 |
taaattcaataaggcgatctctccttaatcattttttttttttgaaaatttatcaatataaaactctagcacaattatctagcagatgagccatgtcgta |
46511847 |
T |
|
| Q |
99 |
gatccatcattattgaaagtttgcaaatacaatgtcttacagtgccaatctcaaaaacacattaaacttgaaaattaagacttatagatccaaatacaat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46511848 |
gatccatcattattgaaagtttgcaaatacaatgtcatacagtgccaatctcaaaaacacattaaacttgaaaattaagacttatagatccaaatacaat |
46511947 |
T |
|
| Q |
199 |
atcacttttttcattacatgctcaaagataattacaccttcactgaacttgaaaaagtacagtaatgcggtatatatttt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46511948 |
atcacttttttcattacatgctcaaagataattacaccttcactgaacttgaaaaagtacagtaatgcggtatatatttt |
46512027 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 15313805 - 15313750
Alignment:
| Q |
138 |
cagtgccaatctcaaaaacacattaaacttgaaaattaagacttatagatccaaat |
193 |
Q |
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|||||| |||||| ||||||||| |||||| |||||||||||||| ||||||||| |
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| T |
15313805 |
cagtgctaatctccaaaacacatcaaacttccaaattaagacttattgatccaaat |
15313750 |
T |
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