View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17863_low_9 (Length: 269)
Name: NF17863_low_9
Description: NF17863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17863_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 25234654 - 25234914
Alignment:
| Q |
1 |
tattcaaaatttcaatatattcacatttaat-----attaacaatcttcatttcaagtgtgagtgtgtaatatgtg-tacttacctccgttgcaaccaac |
94 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
25234654 |
tattcagaatttcaatatattcacatttaatttaatattaacaatcttcatttcaagtgtgagtgtgtaatatgtgatacttacctccgttacaatcaac |
25234753 |
T |
|
| Q |
95 |
aaaacacacctcctgattacaccattgaattttgttgaaacaataataagttggtgtatcacgcgcgagtggtatatcccacatcagatggaaaaatgaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25234754 |
aaaacacacctcctgattacaccattgaattttgttgaaacaataataagttggtgtatcacgcgcgagtggtatatcccacatcagatggaaaaatgaa |
25234853 |
T |
|
| Q |
195 |
tgttgaacactataagttggaggatccataaacctaatacttaagcttctagaataaagtg |
255 |
Q |
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| T |
25234854 |
tgttgaacattataagttggaggatccataaacctaatacttaaacttctagaataaagtg |
25234914 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 35325081 - 35325044
Alignment:
| Q |
168 |
atatcccacatcagatggaaaaatgaatgttgaacact |
205 |
Q |
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||||||||||| |||||||||| ||||||||||||||| |
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| T |
35325081 |
atatcccacattagatggaaaagtgaatgttgaacact |
35325044 |
T |
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