View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_high_11 (Length: 392)
Name: NF17864_high_11
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 42474465 - 42474811
Alignment:
| Q |
18 |
agatattatcccactaaacagtgtcttgacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttggacgtnnn |
117 |
Q |
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| T |
42474465 |
agatattatcccaccaagcagtgtcgtgacctggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgc---------gtaaa |
42474555 |
T |
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| Q |
118 |
nnnnnttagcagagcaagttagcatttatataatcagttttgtgtagagcatttcttttatgtcattgaagctttagactacatacaagttagtccatga |
217 |
Q |
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| T |
42474556 |
aaaaattagcagagcaagtaagcatttatataatcagttttgtgtagagcatttcttt-atgtcattgaagctttagactacatacaagttattccatga |
42474654 |
T |
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| Q |
218 |
tgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggatacatgcttttgtaggctgtaaacatttacggagc |
317 |
Q |
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| T |
42474655 |
tgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggatacatgcttttgtaggctgtaaacatttacggagc |
42474754 |
T |
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| Q |
318 |
tactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagat |
374 |
Q |
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| T |
42474755 |
tactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagat |
42474811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 42467803 - 42468142
Alignment:
| Q |
18 |
agatattatcccactaaacagtgtcttgacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttggacgtnnn |
117 |
Q |
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| T |
42467803 |
agatattatcccactaaacagtgtcttgacttg-tagaaccaaatgcttttgagaacttatg-attgaaccaccaaaagactttgctggctggatgtaaa |
42467900 |
T |
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| Q |
118 |
nnnnnttagcagagcaagtta-gcatttatataatcagttttgtgtagagcatttcttttatgtcatt-gaagctttagactacatacaagttagtccat |
215 |
Q |
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| T |
42467901 |
aaaaattagcggagcaagtaaagcatttatataatcagttttgtgtaga-catttcttt---gtcatttgaagctttagactacatacaagttattccat |
42467996 |
T |
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| Q |
216 |
gatgcacttatggagcatttttgtacatcatttctttttgtcattgaagcttttgagcattatcggatacatgcttttgtaggctgtaaacatttacgga |
315 |
Q |
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| T |
42467997 |
gatacacttatagagcattt-------------cattttgtcattgaagctttcgagcattataggatatattcttttgtaggctgtaaacatttatgga |
42468083 |
T |
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| Q |
316 |
gctactggtctatgctttacttgtgattttatatatacatgttcaattttttcctagat |
374 |
Q |
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| T |
42468084 |
gctactggtctatgcttttcttgtgattttatttataaatgttcaattttttcatagat |
42468142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 42480000 - 42480093
Alignment:
| Q |
18 |
agatattatcccactaaacagtgtcttgacttggtagaaccaaatgcttttgagaacttatggattgaaccaccaaaagactttgctggttgga |
111 |
Q |
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| T |
42480000 |
agatattatcccagtgagcagtgtcgtgacaaggtagaaccaaatacttttgagaacttctggattgaaccaccaaaagactttactggctgga |
42480093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 42480200 - 42480281
Alignment:
| Q |
280 |
ggatacatgcttttgtaggctgtaaacatttacggagctactggtctatgctttacttgtgattttatatatacatgttcaa |
361 |
Q |
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| T |
42480200 |
ggatacatgctttattaggctataaacatttatggagctattggtttatgctttacttgttatttgatttatacatgttcaa |
42480281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 42480111 - 42480188
Alignment:
| Q |
123 |
ttagcagagcaagttagcatttatataatcagttttgtgtagagcatttcttttatgtcattgaagctttagactacata |
202 |
Q |
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| T |
42480111 |
ttagcggagcaagtaagcatttgca-aatcagttttgtgtagagcatttatttt-tggcatcgaagcttgagactacata |
42480188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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