View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17864_high_16 (Length: 316)

Name: NF17864_high_16
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17864_high_16
NF17864_high_16
[»] chr7 (13 HSPs)
chr7 (7-300)||(40328050-40328347)
chr7 (42-90)||(20527483-20527531)
chr7 (42-90)||(21285407-21285455)
chr7 (41-90)||(41139079-41139128)
chr7 (42-90)||(4169069-4169117)
chr7 (42-90)||(14818419-14818467)
chr7 (42-90)||(15265417-15265465)
chr7 (42-90)||(15912768-15912816)
chr7 (45-89)||(22660737-22660781)
chr7 (42-90)||(29658326-29658374)
chr7 (45-89)||(30566499-30566543)
chr7 (42-90)||(38363153-38363200)
chr7 (42-90)||(38451856-38451904)
[»] chr8 (11 HSPs)
chr8 (42-90)||(14012605-14012653)
chr8 (42-90)||(2800012-2800060)
chr8 (42-90)||(10292345-10292393)
chr8 (45-90)||(216201-216245)
chr8 (45-90)||(692761-692805)
chr8 (45-90)||(696970-697014)
chr8 (45-90)||(729824-729868)
chr8 (45-90)||(853719-853763)
chr8 (42-90)||(2696526-2696574)
chr8 (42-90)||(14011092-14011139)
chr8 (42-90)||(38790627-38790675)
[»] chr5 (8 HSPs)
chr5 (42-90)||(9963409-9963457)
chr5 (42-90)||(6806694-6806742)
chr5 (42-89)||(3102182-3102229)
chr5 (42-88)||(3535992-3536037)
chr5 (45-90)||(37417183-37417228)
chr5 (42-90)||(1463864-1463912)
chr5 (42-90)||(30733113-30733161)
chr5 (42-90)||(37303927-37303975)
[»] chr3 (11 HSPs)
chr3 (42-90)||(43774178-43774226)
chr3 (42-90)||(41767822-41767870)
chr3 (42-90)||(9624976-9625024)
chr3 (42-90)||(14868678-14868726)
chr3 (42-90)||(27183735-27183783)
chr3 (42-90)||(38555081-38555129)
chr3 (42-90)||(47191366-47191414)
chr3 (42-88)||(10959126-10959172)
chr3 (42-90)||(16874244-16874291)
chr3 (42-90)||(24130553-24130600)
chr3 (42-90)||(39298021-39298069)
[»] chr6 (12 HSPs)
chr6 (42-90)||(2945589-2945637)
chr6 (41-88)||(4078654-4078701)
chr6 (42-90)||(9064859-9064907)
chr6 (42-90)||(14981756-14981804)
chr6 (42-89)||(6143958-6144005)
chr6 (42-87)||(3448345-3448390)
chr6 (53-130)||(12311416-12311492)
chr6 (42-90)||(5134488-5134536)
chr6 (42-90)||(10455736-10455783)
chr6 (42-90)||(28970161-28970209)
chr6 (42-90)||(30833011-30833058)
chr6 (42-90)||(34524869-34524916)
[»] chr4 (18 HSPs)
chr4 (42-90)||(36008268-36008316)
chr4 (42-90)||(48512192-48512240)
chr4 (42-90)||(48968264-48968312)
chr4 (42-90)||(2565254-2565302)
chr4 (42-90)||(12820459-12820507)
chr4 (42-90)||(28520785-28520833)
chr4 (42-90)||(30152121-30152169)
chr4 (42-90)||(53815689-53815737)
chr4 (46-89)||(4059980-4060023)
chr4 (41-88)||(40150465-40150512)
chr4 (49-90)||(9084759-9084800)
chr4 (42-90)||(9692955-9693003)
chr4 (42-90)||(14149786-14149834)
chr4 (54-90)||(31480276-31480312)
chr4 (42-90)||(42411508-42411556)
chr4 (42-90)||(46799401-46799449)
chr4 (42-90)||(49039499-49039546)
chr4 (42-90)||(56531290-56531338)
[»] chr2 (11 HSPs)
chr2 (42-90)||(34034344-34034392)
chr2 (42-90)||(11133069-11133117)
chr2 (42-90)||(29664596-29664644)
chr2 (42-85)||(3955905-3955948)
chr2 (45-91)||(2935813-2935859)
chr2 (42-90)||(1244563-1244610)
chr2 (42-90)||(21970493-21970541)
chr2 (42-90)||(29034969-29035017)
chr2 (46-90)||(34376540-34376583)
chr2 (42-90)||(41195996-41196044)
chr2 (46-90)||(44187701-44187745)
[»] chr1 (14 HSPs)
chr1 (42-90)||(9527419-9527467)
chr1 (42-90)||(17350054-17350102)
chr1 (42-90)||(29491463-29491511)
chr1 (42-90)||(39238709-39238757)
chr1 (42-90)||(40678816-40678864)
chr1 (42-89)||(25819178-25819225)
chr1 (45-90)||(47763439-47763484)
chr1 (42-90)||(2052736-2052784)
chr1 (42-90)||(7906380-7906427)
chr1 (42-90)||(9768863-9768910)
chr1 (42-90)||(18003810-18003857)
chr1 (42-90)||(19976606-19976654)
chr1 (42-90)||(38021245-38021293)
chr1 (54-90)||(47939252-47939288)
[»] scaffold2098 (1 HSPs)
scaffold2098 (42-89)||(668-715)
[»] scaffold0036 (1 HSPs)
scaffold0036 (41-90)||(25018-25067)
[»] scaffold0809 (1 HSPs)
scaffold0809 (42-90)||(4859-4907)
[»] scaffold0247 (1 HSPs)
scaffold0247 (54-90)||(20729-20764)
[»] scaffold0168 (1 HSPs)
scaffold0168 (42-90)||(34087-34134)
[»] scaffold0112 (1 HSPs)
scaffold0112 (42-90)||(17985-18033)
[»] scaffold0070 (1 HSPs)
scaffold0070 (42-90)||(12558-12606)


Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 40328347 - 40328050
Alignment:
Q  7 atcaagaaaatgactaatagagttaacgtataacggtccccgtgagtatagttcagttggc----agggacaatacattgttatatgcgagagccgtgga 102  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    |||||||||||||||||| |||||||||| ||| |    
T  40328347 atcaagaaaatgactaatagagttaacgtataacgatccccgtgagcatagctcagttggctggcagggacaatacattgttaaatgcgagagcagtgaa 40328248  T
Q  103 ttcgaaacccaaaaatctcacttattcatttataaatcgtagatttagtgtcacagccggtgtgcgtgaaaagcctaatggtttgtgtgagccgcaatta 202  Q
    |||||| | |||||| |||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40328247 ttcgaacctcaaaaacctcacttattcattcatcaatcgtagatttactgtcacagccggtgtgcgcgaaaagcctaatggtttgtgtgagccgcaatta 40328148  T
Q  203 gcacatatagtgatgacattataaatgaatggtttatttaaatgagaaaggacaagttaaatgacaatgtcagagtttgtagtcttaagtctcatttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40328147 gcacatatagtgatgacattataaatgaatggtttatttaaatgagaaaggacaagttaaatgacaatgtcagagtttgtagtcttaagtctcatttt 40328050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 20527531 - 20527483
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||||||    
T  20527531 gtccctgtgagtatagctcagttggcagggacaatgcattgttatatgc 20527483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 21285455 - 21285407
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  21285455 gtccccgtgagcatagctcagttggcagggacaatgcattgttatatgc 21285407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 41139079 - 41139128
Alignment:
Q  41 ggtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  41139079 ggtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 41139128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 4169069 - 4169117
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||||||  ||||||||||||    
T  4169069 gtccccgtgagcatagctcagttggcagggacaatgtattgttatatgc 4169117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 14818467 - 14818419
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||| | |||| ||||||||    
T  14818467 gtccccgtgagcatagctcagttggcagggacagtgcattattatatgc 14818419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 15265465 - 15265417
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||| | |||| ||||||||    
T  15265465 gtccccgtgagcatagctcagttggcagggacagtgcattattatatgc 15265417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 15912768 - 15912816
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||| |||||||| ||||| |||||||||||||    
T  15912768 gtccccgtgagaatagctcaattggcaggaacaatgcattgttatatgc 15912816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 22660737 - 22660781
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    |||||||| |||||||||||| |||||| ||| ||||||||||||    
T  22660737 cccgtgagcatagttcagttgacagggataatgcattgttatatg 22660781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 29658374 - 29658326
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||| ||||||| |||||| |||||||||||||    
T  29658374 gtccccgtgagcatagctcaattggcagcgacaatgcattgttatatgc 29658326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 30566499 - 30566543
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    |||||||| |||| || ||||||||||||||| ||||||||||||    
T  30566499 cccgtgagcatagctcggttggcagggacaatgcattgttatatg 30566543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 38363153 - 38363200
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||||||| |||||||| || ||||||||||||||||    
T  38363153 gtccccgtgagcatagttcaattggcaggaac-atacattgttatatgc 38363200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 38451856 - 38451904
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| ||||| |||| ||||||| |||||||||| |||||||||||||    
T  38451856 gtccctgtgagcatagctcagttgacagggacaatgcattgttatatgc 38451904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 14012605 - 14012653
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  14012605 gtccccgtgagcatagttcagttggcagggacaatgcattgttatatgc 14012653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 2800012 - 2800060
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  2800012 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 2800060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 10292345 - 10292393
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  10292345 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 10292393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 216245 - 216201
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  216245 cccgtgagcatagctcagttggcagggac-atacattgttatatgc 216201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 692805 - 692761
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  692805 cccgtgagcatagctcagttggcagggac-atacattgttatatgc 692761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 697014 - 696970
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  697014 cccgtgagcatagctcagttggcagggac-atacattgttatatgc 696970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 729868 - 729824
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  729868 cccgtgagcatagctcagttggcagggac-atacattgttatatgc 729824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 853763 - 853719
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||    
T  853763 cccgtgagcatagctcagttggcagggac-atacattgttatatgc 853719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 2696526 - 2696574
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||  |||||||||||||||||| |||| ||||||||    
T  2696526 gtccccgtgagcataactcagttggcagggacaatgcattattatatgc 2696574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 14011139 - 14011092
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| ||||| |||||||||||||||||||| || |||||||||||||    
T  14011139 gtccctgtgagcatagttcagttggcagggac-atgcattgttatatgc 14011092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 38790675 - 38790627
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||  |||||||||||||||||| |||| ||||||||    
T  38790675 gtccccgtgagcataactcagttggcagggacaatgcattattatatgc 38790627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9963409 - 9963457
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  9963409 gtccccgtgagtatagctcagttggcagggacaatgcattgttatatgc 9963457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 6806742 - 6806694
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||| |||||| |||||||||||||    
T  6806742 gtccccgtgagcatagctcagttggcagagacaatgcattgttatatgc 6806694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 3102229 - 3102182
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    |||||||| || |||| |||||||||||||||||| ||||||||||||    
T  3102229 gtccccgtaagcatagctcagttggcagggacaatgcattgttatatg 3102182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 3536037 - 3535992
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatat 88  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||    
T  3536037 gtccccgtgagcatagttcagttggcagggac-atgcattgttatat 3535992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 37417228 - 37417183
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||  ||| ||||||||||||||||||||||| ||||||||    
T  37417228 cccgtgagcttagctcagttggcagggacaatacattattatatgc 37417183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 1463864 - 1463912
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| ||||| |||| |||||||||||||||||| |||| ||||||||    
T  1463864 gtccctgtgagcatagctcagttggcagggacaatgcattattatatgc 1463912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 30733113 - 30733161
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| |||||||||| ||||||||||||||||||  ||| ||||||||    
T  30733113 gtccctgtgagtatagctcagttggcagggacaatgtattattatatgc 30733161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 37303927 - 37303975
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||||||  ||| ||||||||    
T  37303927 gtccccgtgagcatagctcagttggcagggacaatgtattattatatgc 37303975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 43774178 - 43774226
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  43774178 gtccccgtgagtatagctcagttggcagggacaatgcattgttatatgc 43774226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 41767870 - 41767822
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  41767870 gtccccgtgagcatagttcagttggcaggaacaatgcattgttatatgc 41767822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9624976 - 9625024
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  9624976 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 9625024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 14868678 - 14868726
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  14868678 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 14868726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 27183783 - 27183735
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  27183783 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 27183735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 38555129 - 38555081
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||||||||||||||| |||||| |||| ||||||||    
T  38555129 gtccccgtgagcatagttcagttggcagagacaatgcattattatatgc 38555081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 47191366 - 47191414
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  47191366 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 47191414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 10959126 - 10959172
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatat 88  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||    
T  10959126 gtccccgtgagcatagctcagttggcagggacaatgcattattatat 10959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 16874291 - 16874244
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  16874291 gtccccgtgagcatagctcagttggcagggac-atgcattgttatatgc 16874244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 24130553 - 24130600
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||  ||||||||||||||| ||||||||||||||||    
T  24130553 gtccccgtgagcataactcagttggcagggac-atacattgttatatgc 24130600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 39298069 - 39298021
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||| |||||||| |||| ||||||||    
T  39298069 gtccccgtgagcatagctcagttggcggggacaatgcattattatatgc 39298021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 2945589 - 2945637
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  2945589 gtccccgtgagcatagctcagttggcagggacaatgcattgttatatgc 2945637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 4078654 - 4078701
Alignment:
Q  41 ggtccccgtgagtatagttcagttggcagggacaatacattgttatat 88  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  4078654 ggtccccgtgagcatagttcagttggcatggacaatgcattgttatat 4078701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9064859 - 9064907
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  9064859 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 9064907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 14981804 - 14981756
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  14981804 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 14981756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 6143958 - 6144005
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    ||||||||||| |||| |||||||||||||||||| |||| |||||||    
T  6143958 gtccccgtgagcatagctcagttggcagggacaatgcattattatatg 6144005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 3448345 - 3448390
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttata 87  Q
    ||||||||||| |||| ||| |||||||||||||| ||||||||||    
T  3448345 gtccccgtgagcatagctcaattggcagggacaatgcattgttata 3448390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 12311492 - 12311416
Alignment:
Q  53 tatagttcagttggcagggacaatacattgttatatgcgagagccgtggattcgaaacccaaaaatctcacttattca 130  Q
    ||||| ||||||||||||||||||||||| |||||||     | || ||||||||| |||||| ||||||||||||||    
T  12311492 tatagctcagttggcagggacaatacattattatatgtagttgtcg-ggattcgaatcccaaacatctcacttattca 12311416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 5134536 - 5134488
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| || |||| ||||||||||| |||||| |||||||||||||    
T  5134536 gtccccgtaagcatagctcagttggcagagacaatgcattgttatatgc 5134488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 10455736 - 10455783
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| ||||||||||||||||| || || |||||||||||||    
T  10455736 gtccccgtgagcatagttcagttggcaggaac-atgcattgttatatgc 10455783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 28970161 - 28970209
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||  ||| ||||||||||||||||||  ||||||||||||    
T  28970161 gtccccgtgagcgtagctcagttggcagggacaatgtattgttatatgc 28970209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 30833011 - 30833058
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||| |||| |||||||||||||||||||| || |||||||||||||    
T  30833011 gtccccatgagcatagttcagttggcagggac-atgcattgttatatgc 30833058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 34524869 - 34524916
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  34524869 gtccccgtgagcatagctcagttggcagggac-atgcattgttatatgc 34524916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 36008268 - 36008316
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  36008268 gtccccgtgagcatagctcagttggcagggacaatgcattgttatatgc 36008316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 48512192 - 48512240
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  48512192 gtccccgtgagcatagctcagttggcagggacaatgcattgttatatgc 48512240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 48968312 - 48968264
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||    
T  48968312 gtccccgtgagcatagttcagttggcagggacaatgcattattatatgc 48968264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 2565254 - 2565302
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||| |||||||||| |||||||||||||    
T  2565254 gtccccgtgagcatagctcagttgacagggacaatgcattgttatatgc 2565302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 12820507 - 12820459
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||| |||||| |||||||||||||    
T  12820507 gtccccgtgagcatagctcagttggcagagacaatgcattgttatatgc 12820459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 28520833 - 28520785
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  28520833 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 28520785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 30152121 - 30152169
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  30152121 gtccccgtgagcatagctcagttggcaggaacaatgcattgttatatgc 30152169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 53815689 - 53815737
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  53815689 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 53815737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 89
Target Start/End: Complemental strand, 4060023 - 4059980
Alignment:
Q  46 ccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||    
T  4060023 ccgtgagtatagttcagttggcaggaacaataaattattatatg 4059980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 40150465 - 40150512
Alignment:
Q  41 ggtccccgtgagtatagttcagttggcagggacaatacattgttatat 88  Q
    |||||||||||| ||||||||||||||||| ||||| |||| ||||||    
T  40150465 ggtccccgtgagcatagttcagttggcaggaacaatgcattattatat 40150512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 9084759 - 9084800
Alignment:
Q  49 tgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||| |||| |||||||||||||||||| |||||||||||||    
T  9084759 tgagcatagctcagttggcagggacaatgcattgttatatgc 9084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9692955 - 9693003
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||| ||| |||| ||||||||    
T  9692955 gtccccgtgagcatagctcagttggcagggataatgcattattatatgc 9693003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 14149786 - 14149834
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||  |||| |||||||||||||||||| |||| ||||||||    
T  14149786 gtccccgtgaccatagctcagttggcagggacaatgcattattatatgc 14149834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 31480276 - 31480312
Alignment:
Q  54 atagttcagttggcagggacaatacattgttatatgc 90  Q
    |||| |||||||||||||||||| |||||||||||||    
T  31480276 atagctcagttggcagggacaatgcattgttatatgc 31480312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 42411556 - 42411508
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||  ||||||||    
T  42411556 gtccccgtgagcatagctcagttggcagggacaatgcataattatatgc 42411508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 46799401 - 46799449
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||||| |||||||||| ||||| |||| ||||||||    
T  46799401 gtccccgtgagcatagtttagttggcaggcacaatgcattattatatgc 46799449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 49039546 - 49039499
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  49039546 gtccccgtgagcatagctcagttggcagggac-atgcattgttatatgc 49039499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 56531338 - 56531290
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| ||||| |||| |||||||||| ||||||| |||||||||||||    
T  56531338 gtccctgtgagcatagctcagttggcaaggacaatgcattgttatatgc 56531290  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 34034344 - 34034392
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  34034344 gtccccgtgagcatagctcagttggcagggacaatacattattatatgc 34034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 11133069 - 11133117
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||| ||||||||| |||||||||||||    
T  11133069 gtccccgtgagcatagctcagttggtagggacaatgcattgttatatgc 11133117  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 29664596 - 29664644
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||| |||||||||||||| |||||||||||||    
T  29664596 gtccccgtgagcatagctcaattggcagggacaatgcattgttatatgc 29664644  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 3955905 - 3955948
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgtta 85  Q
    |||||||||||| || ||||||||||| ||||||||||||||||    
T  3955905 gtccccgtgagtttatttcagttggcaaggacaatacattgtta 3955948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 2935813 - 2935859
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgcg 91  Q
    |||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  2935813 cccgtgagcatagctcagttggcaggaacaatgcattgttatatgcg 2935859  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 1244563 - 1244610
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||| |||||| |||||||||||||||||||| |||||||| |||||||    
T  1244563 gtcctcgtgagcatagttcagttggcagggac-atacattgctatatgc 1244610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 21970541 - 21970493
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||| |||||||||| |||| ||||||||    
T  21970541 gtccccgtgagcatagctcagttgacagggacaatgcattattatatgc 21970493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 29034969 - 29035017
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||| |||||||||||||| |||| ||||||||    
T  29034969 gtccccgtgagcatagctcacttggcagggacaatgcattattatatgc 29035017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 34376540 - 34376583
Alignment:
Q  46 ccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||||||||||||||| || |||||||||||||    
T  34376540 ccgtgagtataattcagttggcagggac-atgcattgttatatgc 34376583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 41196044 - 41195996
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||| |||||| ||| |||||||||||||    
T  41196044 gtccccgtgagcatagctcagttgacagggataatgcattgttatatgc 41195996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 44187701 - 44187745
Alignment:
Q  46 ccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||    
T  44187701 ccgtgagcatagttcagttggcagggataatgcattattatatgc 44187745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9527419 - 9527467
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||||||    
T  9527419 gtccccgtgagcatagctcagttggcagggacaatgcattgttatatgc 9527467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 17350054 - 17350102
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  17350054 gtccccgtgagtatagctcagttggcagggacaatgcattattatatgc 17350102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 29491463 - 29491511
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  29491463 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 29491511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 39238709 - 39238757
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  39238709 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 39238757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 40678816 - 40678864
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  40678816 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 40678864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 25819178 - 25819225
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    ||||||||||| |||| |||||||||||||||||| |||| |||||||    
T  25819178 gtccccgtgagcatagctcagttggcagggacaatgcattattatatg 25819225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 47763484 - 47763439
Alignment:
Q  45 cccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||| |||| |||||||||||||||||| |||| ||||||||    
T  47763484 cccgtgagcatagctcagttggcagggacaatgcattattatatgc 47763439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 2052784 - 2052736
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| | ||||||    
T  2052784 gtccccgtgagcatagctcagttggcagggacaatgcattatcatatgc 2052736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 7906427 - 7906380
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| ||||||||||||| |||||| || |||||||||||||    
T  7906427 gtccccgtgagcatagttcagttggtagggac-atgcattgttatatgc 7906380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 9768910 - 9768863
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  9768910 gtccccgtgagcatagctcagttggcagggac-atgcattgttatatgc 9768863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 18003810 - 18003857
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  18003810 gtccccgtgagcatagctcagttggcagggac-atgcattgttatatgc 18003857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 19976654 - 19976606
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||||||  || |||||||||    
T  19976654 gtccccgtgagcatagctcagttggcagggacaatgtatggttatatgc 19976606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 38021245 - 38021293
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||| ||||||| |||| ||||||||    
T  38021245 gtccccgtgagcatagctcagttggcaaggacaatgcattattatatgc 38021293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 47939288 - 47939252
Alignment:
Q  54 atagttcagttggcagggacaatacattgttatatgc 90  Q
    |||| |||||||||||||||||| |||||||||||||    
T  47939288 atagctcagttggcagggacaatgcattgttatatgc 47939252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2098 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 715 - 668
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatg 89  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||||    
T  715 gtccctgtgagtatagctcagttggcagggacaatgcattgttatatg 668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 25018 - 25067
Alignment:
Q  41 ggtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  25018 ggtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 25067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 4907 - 4859
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||||||    
T  4907 gtccccgtgagcatagctcagttggcagggacaatgcattattatatgc 4859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 20729 - 20764
Alignment:
Q  54 atagttcagttggcagggacaatacattgttatatgc 90  Q
    |||||||||||||||||||| ||||||||||||||||    
T  20729 atagttcagttggcagggac-atacattgttatatgc 20764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 34134 - 34087
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||||||||||||||| || |||||||||||||    
T  34134 gtccccgtgagcatagctcagttggcagggac-atgcattgttatatgc 34087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 18033 - 17985
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||||||||| |||| ||| |||| ||||||||| |||||||||||||    
T  18033 gtccccgtgagcatagctcaattggtagggacaatgcattgttatatgc 17985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 12558 - 12606
Alignment:
Q  42 gtccccgtgagtatagttcagttggcagggacaatacattgttatatgc 90  Q
    ||||| ||||| |||| |||||||||||||||||| |||| ||||||||    
T  12558 gtccctgtgagcatagctcagttggcagggacaatgcattattatatgc 12606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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