View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_high_4 (Length: 471)
Name: NF17864_high_4
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 6026750 - 6027205
Alignment:
| Q |
1 |
ctagtgaagaaccagggcagcttcttctaccagctccaaaagacaataattcaacattctgcccttttagattcaaaggactctgtccaacttcatttat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
6026750 |
ctagtgaagaacctgggcagcttcttctaccagctccaaaagacaataattcaacattctgcccctttagattcaaaggactctgtcccacttcatttat |
6026849 |
T |
|
| Q |
101 |
aaaccttagtggttgaaactcaagtggattttcccaataatttgagtctctaccaattgcccataaattaacaaacaatgttgtctttgatggaatgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
6026850 |
aaaccttagtggttgaaactcaagtggattttcccaataatttgagtctctaccaattgcccataaattaacaaacaaagttgtctttgctggaatgtaa |
6026949 |
T |
|
| Q |
201 |
tatccaccaatattacaatcttcagttgattgtctcacaattaaaggtccagttgggtgaagcctcaatgtttcttttactattgattgaatatatggta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6026950 |
tatccaccaatattacaatcttcagttgattgtctcacaattaaaggtccagttgggtgaagcctcaatgtttcttttactattgattgaatatatggta |
6027049 |
T |
|
| Q |
301 |
agtttggaatatctgattcctctaccaaccttttcttaccaactattgaatcaatctcttcccttgctttttccatcatatctctatggtttataagttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6027050 |
agtttggaatatctgattcctctaccaaccttttcttaccaactattgaatcaatctcttcccttgctttttccatcatatctctatggtttataagttc |
6027149 |
T |
|
| Q |
401 |
agccaatgcccattctattgtagatgctgatgactcagttccagcaccaaaaatgt |
456 |
Q |
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| T |
6027150 |
agccaatgcccattctattgtagatgctgatgactcagttccagcaccaaaaatgt |
6027205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 36735374 - 36735271
Alignment:
| Q |
86 |
tccaacttcatttataaaccttagtggttgaaactcaagtggattttcccaataatttgagtctctaccaattgcccataaattaacaaacaatgttgtc |
185 |
Q |
| |
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|||||||||||| ||||||||| ||| ||||||||||||||| ||||||||||| | ||| || ||||| | ||||| ||||||||||||| |||| |
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| T |
36735374 |
tccaacttcattaataaacctttctggcctaaactcaagtggattatcccaataattagggtcccttccaatagaccatatattaacaaacaattgtgtc |
36735275 |
T |
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| Q |
186 |
tttg |
189 |
Q |
| |
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|||| |
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| T |
36735274 |
tttg |
36735271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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