View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17864_high_8 (Length: 428)

Name: NF17864_high_8
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17864_high_8
NF17864_high_8
[»] chr1 (8 HSPs)
chr1 (73-428)||(31527057-31527412)
chr1 (15-234)||(32592496-32592715)
chr1 (15-213)||(37030630-37030828)
chr1 (288-428)||(32593209-32593344)
chr1 (288-428)||(51823947-51824082)
chr1 (19-145)||(51824717-51824843)
chr1 (322-428)||(37030396-37030502)
chr1 (150-233)||(51824265-51824353)
[»] chr3 (10 HSPs)
chr3 (15-234)||(49208111-49208330)
chr3 (15-234)||(49212951-49213170)
chr3 (15-213)||(49188119-49188317)
chr3 (15-213)||(49191855-49192053)
chr3 (15-213)||(49202961-49203159)
chr3 (288-426)||(49211761-49211894)
chr3 (289-426)||(49207187-49207319)
chr3 (322-419)||(49190950-49191047)
chr3 (322-416)||(49187262-49187356)
chr3 (322-416)||(49202242-49202336)
[»] chr8 (2 HSPs)
chr8 (15-220)||(26756489-26756696)
chr8 (327-420)||(26756236-26756329)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 73 - 428
Target Start/End: Complemental strand, 31527412 - 31527057
Alignment:
73 gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31527412 gtcgaggctgctaaagctgtggctctaagggaagctgagttgcagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt 31527313  T
173 tacttagcaaagctagtgttgagtatgaaaccaaggttagtccatgcaaatataactccttcaatttcnnnnnnnnnnnnnnnnnnnnnnncaatttgtt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       |||||||||    
31527312 tacttagcaaagctagtgttgagtatgaaaccaaggttagtccatgcaaatataactccttcaatttcatttattaattattattattattcaatttgtt 31527213  T
273 ttactagaaacaagattaagtactggttgaaattctggatggtttactttaggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaa 372  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
31527212 ttactagcaacaagattaagtactggttgaaattctgtatggtttactttaggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaa 31527113  T
373 gcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgtcagatgc 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31527112 gcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgtcagatgc 31527057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 32592496 - 32592715
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
32592496 taattctgagttggcgaagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaagctgtggctctaagggaagctgagttg 32592595  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
32592596 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttcagtatgaaaccaaggttagtc 32592695  T
215 catgcaaatataactccttc 234  Q
    |||||||||||||| |||||    
32592696 catgcaaatataaccccttc 32592715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 37030828 - 37030630
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||    || ||||||   |||||||||||||||||     
37030828 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgtgaaactaagggaagctgagtta 37030729  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 213  Q
    || ||||| ||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||||||| | ||||||||||||||||||    
37030728 caaggtgaagttgagaggatgaatgcattgactactactgaaaagcttaaagcagagttccttagcaaagctagtgttcaatatgaaaccaaggttagt 37030630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 288 - 428
Target Start/End: Original strand, 32593209 - 32593344
Alignment:
288 ttaagtactggttgaaattctggatggtttactttaggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgag 387  Q
    ||||||||||||||||||| |||||||||||     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
32593209 ttaagtactggttgaaattttggatggttta-----ggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgag 32593303  T
388 aagaaggcagaggcagaagcacagaaagcattgtcagatgc 428  Q
    ||||||||||||||||||||||||||||||||| |||||||    
32593304 aagaaggcagaggcagaagcacagaaagcattggcagatgc 32593344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 288 - 428
Target Start/End: Complemental strand, 51824082 - 51823947
Alignment:
288 ttaagtactggttgaaattctggatggtttactttaggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgag 387  Q
    |||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
51824082 ttaagtactggttgaaattctgaatggtttat-----gtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtacgag 51823988  T
388 aagaaggcagaggcagaagcacagaaagcattgtcagatgc 428  Q
    ||||||||||||||||||||||||||||||||| |||||||    
51823987 aagaaggcagaggcagaagcacagaaagcattggcagatgc 51823947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 51824843 - 51824717
Alignment:
19 tctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttgcagg 118  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||||||||||| |||||| ||||||||||||||||||||| |    
51824843 tctgagttggcgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaatctgtggttctaagggaagctgagttgcaag 51824744  T
119 gtgaggttgagaggatgaatgctttga 145  Q
    |||||||||||| ||||||||||||||    
51824743 gtgaggttgagaagatgaatgctttga 51824717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 322 - 428
Target Start/End: Complemental strand, 37030502 - 37030396
Alignment:
322 taggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattgt 421  Q
    ||||| ||||| || ||||||||  | ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |     
37030502 taggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatcgg 37030403  T
422 cagatgc 428  Q
    |||||||    
37030402 cagatgc 37030396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 51824353 - 51824265
Alignment:
150 tactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggt-----tagtccatgcaaatataactcctt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||     ||||||||||||||||||||||||    
51824353 tactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagtttagtccatgcaaatataactcctt 51824265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 49208330 - 49208111
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    |||||| |||||||| ||||||||||| |||||||| | ||||||||||||||||||  | |||||||||||||| ||||||||||||||||||||||||    
49208330 taattccgagttggctaagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaagccgtggctctaagggaagctgagttg 49208231  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtc 214  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||    
49208230 caaggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttccttagcaaagctagtgttgaatatgacactaaggttagtc 49208131  T
215 catgcaaatataactccttc 234  Q
    | ||||||| ||||| ||||    
49208130 cttgcaaatttaacttcttc 49208111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 49213170 - 49212951
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    |||||| |||||||| || ||||| || |||||||| ||||||||||| ||||||||||| |||||    || |||||||||||||||||||||||||||    
49213170 taattcggagttggccaaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggcgaagaaggctgtggctctaagggaagctgagttg 49213071  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagtc 214  Q
    || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||    
49213070 caaggtgaggttgagaagatgaatgctttgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaactaaggttagtc 49212971  T
215 catgcaaatataactccttc 234  Q
    ||||||| ||||||| ||||    
49212970 catgcaactataacttcttc 49212951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 49188317 - 49188119
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||    || ||||| |||||||||||||||||||||    
49188317 taattctgagttggctaagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggcgaagaaggctgttgctctaagggaagctgagttg 49188218  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 213  Q
    || ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
49188217 caaggtgaagtcgagaggatgaatgcattgactacaactgagaagcttaaagctgatttacttagcaaagctagtgttcaatatgaaaccaaggttagt 49188119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 49192053 - 49191855
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||     
49192053 taattctgaattggctaagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgccaaagccgtcgctctaagggatgctgagtta 49191954  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 213  Q
    || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||||    
49191953 caaggtgaagttgagaggatgaatgctttgactacaactgagaagcttaaagctgagttccttagcaaagctagtgttcaatatgaaaccaaggttagt 49191855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 49203159 - 49202961
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||    || || |||||||||||||| ||||||||     
49203159 taattctgagttggctaagaagaaggcagcttggactaaggcggctcaggtggctgaagttgaggcgaagaaggccgtggctctaagggatgctgagtta 49203060  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatttacttagcaaagctagtgttgagtatgaaaccaaggttagt 213  Q
    || ||||| ||||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| | |||||||| |||||||||    
49203059 caaggtgaagttgaaaggatgaatgctttgactactactgagaagcttaaagccgagttccttagcaaagctagtgttcaatatgaaactaaggttagt 49202961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 288 - 426
Target Start/End: Complemental strand, 49211894 - 49211761
Alignment:
288 ttaagtactggttgaaattctggatggtttactttaggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgag 387  Q
    |||||| | |||||||||||||||||     || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||    
49211894 ttaagtgccggttgaaattctggatg-----ctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagcaattctgtttgag 49211800  T
388 aagaaggcagaggcagaagcacagaaagcattgtcagat 426  Q
    ||||||||||||||||||||||| ||||||||| |||||    
49211799 aagaaggcagaggcagaagcacaaaaagcattggcagat 49211761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 289 - 426
Target Start/End: Complemental strand, 49207319 - 49207187
Alignment:
289 taagtactggttgaaattctggatggtttactttaggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgaga 388  Q
    ||||| ||| |||||||||||||||     || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
49207319 taagtgctgattgaaattctggatg-----ctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagcaattctgtatgaga 49207225  T
389 agaaggcagaggcagaagcacagaaagcattgtcagat 426  Q
    ||||||||||||||||||| || ||||||||| |||||    
49207224 agaaggcagaggcagaagcgcaaaaagcattggcagat 49207187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 49191047 - 49190950
Alignment:
322 taggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatt 419  Q
    ||||||||||| || ||||||||  | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
49191047 taggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatt 49190950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 322 - 416
Target Start/End: Complemental strand, 49187356 - 49187262
Alignment:
322 taggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagc 416  Q
    ||||||||||| || ||||||||  | ||||||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
49187356 taggtacaagaagcaaactgggagctgtacaagaaacagaaagagactgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagc 49187262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 322 - 416
Target Start/End: Complemental strand, 49202336 - 49202242
Alignment:
322 taggtacaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagc 416  Q
    ||||||||||| || ||||||||  | |||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
49202336 taggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagc 49202242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 26756696 - 26756489
Alignment:
15 taattctgagttggcgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaagctgtggctctaagggaagctgagttg 114  Q
    |||||| |||||| | ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||||||    
26756696 taattccgagttgactaagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaagctgtggcccttagggaagctgagttg 26756597  T
115 cagggtgaggttgagaggatgaatgctttgactactactgagaagcttaaagctgatt---tacttagcaaagctagtgttgagtatgaaaccaaggtta 211  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||| |||| |   || |||| |||||||||||  | ||||||||||||||||    
26756596 caaggtgaggttgagaggatgaatgctttgactaccactgagaagcttaaacctgagttcctaattagtaaagctagtgtaca-tatgaaaccaaggtta 26756498  T
212 gtccatgca 220  Q
    |||||||||    
26756497 gtccatgca 26756489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 327 - 420
Target Start/End: Complemental strand, 26756329 - 26756236
Alignment:
327 acaagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcattg 420  Q
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26756329 acaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgagaagaagacagaggcagaagcacagatagcattg 26756236  T

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