View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17864_low_1 (Length: 650)
Name: NF17864_low_1
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 317 - 641
Target Start/End: Original strand, 16485934 - 16486254
Alignment:
| Q |
317 |
tagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaacttttatatatatacaacttctactaactaaattcattcattaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16485934 |
tagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaacttttatatatatacaacttctactaactaaattcattcattaa |
16486033 |
T |
|
| Q |
417 |
tgagaaatatattttcattcaattctctcatttcattcatagtaatttacattttaaaattgaaaagatactatcagcttcaatgtattccatcaattag |
516 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
16486034 |
tgagaaatatattttcattcaattctctctattcattcatagtaatttacattttaaaattggaaagatactatcagcttcaatgcattccatcaattag |
16486133 |
T |
|
| Q |
517 |
acgagaaattaagtttctattcgatacaaggacaacacttaaatttcatacacttattgtc--tttgaatgtgtgaaaaacatttgttcatttggttcta |
614 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||| || |
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|
| T |
16486134 |
acgataaattaagtttctattagatataaggacaacactcaaatttcatacacttattgtcgttgtgaatgtgtgaaaaacatttgtttatt------ta |
16486227 |
T |
|
| Q |
615 |
gcactttggtccttgtgatttgatgat |
641 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
16486228 |
gcactttgatccttgtgatttgatgat |
16486254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 66 - 257
Target Start/End: Original strand, 16485745 - 16485935
Alignment:
| Q |
66 |
aatgtttttattcaatgtctttttggtaaaaaagtgtatgtctacttccttagtatcagattgtagatttcttcaccaaatctctacttcctcagccttt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
16485745 |
aatgtttttattcaatgtctttttggtaaaa-agtgtatgtctacttccttagtatcagatcgtagatttcttcaccaaatctctacttcctcagccttt |
16485843 |
T |
|
| Q |
166 |
tcatactttattattcaagcttgcaatgattgatatctatcaatctccaacttgaggagggatattacatcatgtcagctaagaaaggatta |
257 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16485844 |
tcatacattattatccaagcctgcaatgattgatatctatcaatctccaacttgaggagggatattacatcatgtcagctaagaaaggatta |
16485935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 16485673 - 16485735
Alignment:
| Q |
18 |
cattatgtttctgaaatgtgtgtggttgttttgcaactagcatctagaaatgtttttattcaa |
80 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16485673 |
cattatgtttcagatatgtgtgtggttgttttgcaactagcatctagaaatgtttttattcaa |
16485735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 278 - 445
Target Start/End: Complemental strand, 10876255 - 10876090
Alignment:
| Q |
278 |
gttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaa--ctt |
375 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||||| | ||| |
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|
| T |
10876255 |
gttagagaatgattacttgtgcaacaagtaatcattatatagttaagacttagtgatattgtgtttgttacacatggtaagctaacatagagacactctt |
10876156 |
T |
|
| Q |
376 |
ttatatatatacaacttctactaactaaattcattcattaatgagaaatatattttcattcaattctctc |
445 |
Q |
| |
|
| |||||||||||||| | | | | || ||||||||||||||||| |||||| |||||||| |||| |
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|
| T |
10876155 |
gtgtatatatacaacttgttcaagc----ttaattcattaatgagaaatctatttttattcaattatctc |
10876090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 273 - 410
Target Start/End: Complemental strand, 5302069 - 5301930
Alignment:
| Q |
273 |
agttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaa |
372 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||| | |
|
|
| T |
5302069 |
agttagttagagaatgattatttgtgcaacaagtattcattagatagttaagagttagcgatcttgtgtttgctacacataataagctaacatggagaca |
5301970 |
T |
|
| Q |
373 |
--cttttatatatatacaacttctactaactaaattcatt |
410 |
Q |
| |
|
||| | || | || ||||||||||||||| |||||||| |
|
|
| T |
5301969 |
ctcttgtgtacacattcaacttctactaactcaattcatt |
5301930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 272 - 437
Target Start/End: Original strand, 24678126 - 24678289
Alignment:
| Q |
272 |
cagttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacat--agag |
369 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||| |||||||| ||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||| |
|
|
| T |
24678126 |
cagttagttagagaatgattacgtgtgtaataaggaatcattaaatagttaagagttagcgatctcatgtttgtcacacataataagctaacatcgagac |
24678225 |
T |
|
| Q |
370 |
aaacttttatatatatacaacttctactaactaaattcattcattaatgagaaatatattttcattca |
437 |
Q |
| |
|
|| ||| | |||||||||||||| ||||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
24678226 |
aatcttgtgtatatatacaacttgtactatctca----attcattaatgagaaatctattttcattca |
24678289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 437
Target Start/End: Original strand, 24719557 - 24719731
Alignment:
| Q |
272 |
cagttagttagagaatgattacctgtgcaacaagtaatcattagatagttaaga-----------gttagtgatcttgtgtttgttacacatgataagct |
360 |
Q |
| |
|
|||||||||||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
24719557 |
cagttagttagagaatgattactagtgtaacaggtaattattagatagttaagatttagttaaatgttagtgatctcatgtttgtcacacataataagct |
24719656 |
T |
|
| Q |
361 |
aacatagagaaactttt--atatatatacaacttctactaactaaattcattcattaatgagaaatatattttcattca |
437 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| ||||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
24719657 |
aacatagagacactcttgcgtatatatacaacttgtactagctca----attcattaatgagaaatctattttcattca |
24719731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 5302234 - 5302099
Alignment:
| Q |
125 |
attgtagatttcttcaccaaatctctacttcctcagccttttcatactttattattcaagcttgcaatgattgatatctatcaatctccaacttgaggag |
224 |
Q |
| |
|
|||| |||||| |||||||||| | ||||||||||||||||||||| |||||| |||| | | ||||||||||| |||| ||||||||||| | | |
|
|
| T |
5302234 |
attgcagatttagtcaccaaatcattgcttcctcagccttttcatactctattatccaagttggggatgattgatatttatcgtcctccaacttga-gcg |
5302136 |
T |
|
| Q |
225 |
ggatattacatcatgtcagctaagaaaggattacttg |
261 |
Q |
| |
|
|||| | ||| ||| |||| ||| |||||||||||| |
|
|
| T |
5302135 |
ggatttcacaccatatcagttaaagaaggattacttg |
5302099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 272 - 435
Target Start/End: Original strand, 19242437 - 19242598
Alignment:
| Q |
272 |
cagttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaa |
371 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| || ||||||||||||| | | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19242437 |
cagttagttagagaatgatgacatgtgcaacaagtaatcatgagttagttaagagttaataagcttgtgtttgttacacataataagctaacatagagac |
19242536 |
T |
|
| Q |
372 |
acttt--tatatatatacaacttctactaactaaattcattcattaatgagaaatatattttcatt |
435 |
Q |
| |
|
||||| | |||||||| ||||| ||||| || | |||||| |||||||||| |||||||||| |
|
|
| T |
19242537 |
acttttgtgtatatataaaacttgtactagctca----attcatcaatgagaaatctattttcatt |
19242598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 47705231 - 47705196
Alignment:
| Q |
130 |
agatttcttcaccaaatctctacttcctcagccttt |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47705231 |
agatttcttcaccaaatctcttcttcctcagccttt |
47705196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 37736714 - 37736650
Alignment:
| Q |
120 |
atcagattgtagatttcttcaccaaatctctacttcctcagccttttcatactttattattcaag |
184 |
Q |
| |
|
|||| |||| |||||| ||||| |||||||| | |||||||||||||||||| |||||| |||| |
|
|
| T |
37736714 |
atcaaattgcagattttttcactaaatctctcttacctcagccttttcatactctattatccaag |
37736650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 273 - 385
Target Start/End: Complemental strand, 20528573 - 20528461
Alignment:
| Q |
273 |
agttagttagagaatgattacctgtgcaacaagtaatcattagatagttaagagttagtgatcttgtgtttgttacacatgataagctaacatagagaaa |
372 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
20528573 |
agttagttagagaatgattacttgtgtaataagtaatcattagataattaagagttagtgatctcatgttggttacacgtgataagctaacataaagatg |
20528474 |
T |
|
| Q |
373 |
cttttatatatat |
385 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
20528473 |
cttttatgtatat |
20528461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 132 - 265
Target Start/End: Complemental strand, 2653534 - 2653402
Alignment:
| Q |
132 |
atttcttcaccaaatctctacttcctcagccttttcatactttattattcaagcttgcaatgattgatatctatcaatctccaacttgaggagggatatt |
231 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| | |||||| ||| | | |||||||||||||||||| ||| ||||| | | | ||||| |
|
|
| T |
2653534 |
atttcttcaccaaatctttacttcctcaaccttttcata-tctattatctaagttagggatgattgatatctatcaacctctaactttatgggtgatatc |
2653436 |
T |
|
| Q |
232 |
acatcatgtcagctaagaaaggattacttgtgta |
265 |
Q |
| |
|
||| ||| ||| ||||| |||||||||||||||| |
|
|
| T |
2653435 |
acaacatatcatctaaggaaggattacttgtgta |
2653402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 38845152 - 38845117
Alignment:
| Q |
130 |
agatttcttcaccaaatctctacttcctcagccttt |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38845152 |
agatttcttcaccaaatctcttcttcctcagccttt |
38845117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 26619500 - 26619398
Alignment:
| Q |
125 |
attgtagatttcttcaccaaatctctacttcctcagccttttcatactttattattcaagcttgcaatgattgatatctatcaatctccaacttgaggag |
224 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||||||||||||||| | || | ||| |||| | | |||||||| ||||||||| ||||||||||||| | |
|
|
| T |
26619500 |
attgttgatttcttcactaagtctctgcttcctcagccttttcacatttcactatccaagttggagatgattgacatctatcaacctccaacttgagggg |
26619401 |
T |
|
| Q |
225 |
gga |
227 |
Q |
| |
|
||| |
|
|
| T |
26619400 |
gga |
26619398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 23883386 - 23883322
Alignment:
| Q |
120 |
atcagattgtagatttcttcaccaaatctctacttcctcagccttttcatactttattattcaag |
184 |
Q |
| |
|
|||| |||| |||||||||||| || ||||| || ||||||||||||||||| ||| ||| |||| |
|
|
| T |
23883386 |
atcaaattgcagatttcttcactaagtctctcctacctcagccttttcatacattactatccaag |
23883322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 36731249 - 36731185
Alignment:
| Q |
120 |
atcagattgtagatttcttcaccaaatctctacttcctcagccttttcatactttattattcaag |
184 |
Q |
| |
|
|||| |||| |||||| ||||| |||||||| | |||||||||||||||||| |||||| |||| |
|
|
| T |
36731249 |
atcaaattgcagattttttcactaaatctctcttacctcagccttttcatactctattatccaag |
36731185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 11357354 - 11357281
Alignment:
| Q |
327 |
ttagtgatcttgtgtttgttacacatgataagctaacatagagaaac--ttttatatatatacaacttctacta |
398 |
Q |
| |
|
||||| ||||| |||| ||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
11357354 |
ttagtaatcttatgttggttacacataataagctaacatagagaaactattttgtatatatacaacttgtacta |
11357281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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