View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_11 (Length: 403)
Name: NF17864_low_11
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 55878866 - 55878477
Alignment:
| Q |
17 |
atatccaagaatcagtgcttgatgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactataatcaccttaagtcatagcagtactcaa |
116 |
Q |
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| T |
55878866 |
atatccaacaattagtgcttgatgattaatttgaaattaaaaagaaaagaaatctctcaagctataaactattataaccttatgtcatagcagtactcaa |
55878767 |
T |
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| Q |
117 |
atggaagataatcagaattagaaaatgaatgcctttgttt---catttattctatgacattccatgcatcatcaacataaattggttttcaatgaatcaa |
213 |
Q |
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| T |
55878766 |
agggaagatcatcagaatcagaaaacgaatgccttttttttttcatttattctatgacattccatgcatcagcaacataaattcgttttcaatgaatcaa |
55878667 |
T |
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| Q |
214 |
tgaacatatttacgctagtgaaagacggaatttttcacaaaattgtgaatatatcataattgaaatccattcttcattgaaagtgggtaatgagaagtgt |
313 |
Q |
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| T |
55878666 |
tgaacatatgtacgctagtgaaagacagaatttttcacaaaactgccaatatatcataattgaaatctagtcttcattgaaagtgggtaatgagaaatgt |
55878567 |
T |
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| Q |
314 |
aaaacagaaaaaacaaatcaattaagaagattgcatcaatgtataattaaaatagcagagcaaatcggttgagacacattgcatacctta |
403 |
Q |
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| T |
55878566 |
aaaacagaaccaacaaatcaattaagaagattgcatcaatgtataattaaaatagcaaatcaaatcagttgtgacacattgcatacctta |
55878477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 268 - 387
Target Start/End: Original strand, 46622955 - 46623074
Alignment:
| Q |
268 |
cataattgaaatccattcttcattgaaagtgggtaatgagaagtgtaaaacagaaaaaacaaatcaattaagaagattgcatcaatgtataattaaaata |
367 |
Q |
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| T |
46622955 |
cataattgaaatctagtcttcattggaagtgggtaatgagatgagtcaaacagaaacaacgaatcaattaagaagattgtgtcaacatacgattaaaata |
46623054 |
T |
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| Q |
368 |
gcagagcaaatcggttgaga |
387 |
Q |
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| T |
46623055 |
gcagagcaaatcagttgaga |
46623074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 9062490 - 9062627
Alignment:
| Q |
19 |
atccaagaatcagtgcttgatg--attaatttgaaattaaaaagaaaagaaatctctcaagctataaactataatcaccttaagtcatagcagtactcaa |
116 |
Q |
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| T |
9062490 |
atccaacaatcagtgcttggtgtgattaatttgaaattaaaaagaaaagaaatctttcaagctataaactataatcaccttaagtcatagcagtactcaa |
9062589 |
T |
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| Q |
117 |
atggaagataatcagaattagaaaatgaatgcctttgt |
154 |
Q |
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| T |
9062590 |
agggaagatcatcagaattagaaaatgaatgcctttgt |
9062627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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